Nocardioides sp. LMS-CY: KM427_10660
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Entry
KM427_10660 CDS
T10875
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
nocl Nocardioides sp. LMS-CY
Pathway
nocl03030
DNA replication
nocl03430
Mismatch repair
nocl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nocl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KM427_10660
03430 Mismatch repair
KM427_10660
03440 Homologous recombination
KM427_10660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nocl03032
]
KM427_10660
03400 DNA repair and recombination proteins [BR:
nocl03400
]
KM427_10660
Enzymes [BR:
nocl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KM427_10660
DNA replication proteins [BR:
nocl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KM427_10660
DNA repair and recombination proteins [BR:
nocl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KM427_10660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
XdhC_C
UVR
DEDDh_C
RNase_H_2
TMV_coat
Motif
Other DBs
NCBI-ProteinID:
QWF24102
LinkDB
All DBs
Position
complement(2196864..2198678)
Genome browser
AA seq
604 aa
AA seq
DB search
MAQGPRVHSGVQRATSTWESQRSFDELGRPLRDITFCVVDLETTGGSAEGGSMITEIGAV
KVRGGELLGEFQTLVNPRAEIPAFIAVLTGITNGMVSDAPPIESALPAFLEFAAGCVLVA
HNAPFDVGFLRYFAEQQGRPWPTFEVLDTARLARRVITRDDAPNCKLSSLAKAFGSATTP
NHRALQDARATVDVLHGLMERLGGLGVHTLEELQTFSSRVSTAQRRKRHLAEALPHAPGV
YLFRDDRARVLYVGTSRDLRTRVRSYFTASETRSRIGEMVGIATVVDGIECATALEAEVR
ELRLIAEHKPRYNRRSRFPEKVHFIKLTREPWPRLSLVRRVLDDDADYLGPFSSKKTAEK
CLAALHDTFPIRQCSDRIARDPGGPAGGRTPCVLAEMDRCLSPCDGSVDAATYAAVVRQL
RDTLLRRPDEVVEAINARMAALADDERFEEAGVHRDRLAAFVRAAARTQRLAALTRCPEV
VAARHEDDGRWAVHVVRHGRLAAAGVIPPGADAHAFVTTLRQSAETVRPGPGPVPAASAE
ETEKVLRWLESPGIRLVDVDGEWTCPVAGATRHLAVHDAVNQSRLSLVPFADRRGLAPVH
RPAR
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggcccaaggaccccgcgtgcacagcggcgttcagcgtgcgacctccacctgggagtcg
caacgcagtttcgacgagctgggccgtccgctgcgcgacatcacgttctgcgtcgtcgac
ctcgagaccaccggcggctccgcggagggcggctcgatgatcaccgagatcggggcggtc
aaggtgcgcggcggcgagctgctcggcgagttccagaccctggtcaacccccgcgccgag
atcccggccttcatcgcggtgctgaccggtatcaccaacggcatggtctccgacgcgccg
ccgatcgagtcggcgctcccggcgttcctcgagttcgcggccggctgcgtgctggtcgcc
cacaacgcgccgttcgacgtcgggttcctgcgctacttcgccgagcagcagggccgcccg
tggccgacgttcgaggtgctcgacaccgcccgcctggcccggcgggtgatcacccgcgac
gacgcgcccaactgcaagctctcctcgctcgcgaaggcgttcgggtccgcgaccaccccc
aaccaccgggcgctccaggacgcgcgggcgaccgtcgacgtgctgcacgggctgatggag
cgcctcggcgggctgggcgtgcacaccctcgaggagctgcagaccttctcctcccgggtc
tccacggcgcagcgccgcaagcgccacctcgcggaggcgctcccccatgccccgggcgtc
tacctcttccgcgacgaccgggcgcgcgtgctctacgtcggcacctcgcgcgacctgcgc
acccgggtgcgctcgtacttcaccgcttcggagacccggtcgcggatcggcgagatggtc
ggcatcgcgaccgtcgtcgacggcatcgagtgcgcgacggcgctggaggccgaggtccgc
gagctgcgcctgatcgcggagcacaagccccgctacaaccggcgctcccggttccccgag
aaggtccacttcatcaagctgacccgcgagccctggccgcggctgtcgctggtgcgacgg
gtgctcgacgacgacgccgactacctcggcccgttctcgtcgaagaagaccgcggagaag
tgcctggccgcgctccacgacacgttcccgatccggcagtgctccgaccggatcgcccgc
gaccccggcggccccgcgggcgggcggaccccctgcgtgctggccgagatggaccgctgc
ctgtccccctgcgacggcagcgtcgacgccgcgacgtacgccgcggtcgtgcgccagctg
cgcgacaccctgctgcgccgtcccgacgaggtggtcgaggcgatcaacgcgcggatggcc
gccctcgccgacgacgagcgcttcgaggaggccggggtgcaccgcgaccggctcgcggcg
ttcgtgcgcgcggccgcccgcacccagcggctcgccgcgctcacccgctgccccgaggtg
gtcgccgcgcggcacgaggacgacggccggtgggcggtccacgtggtccgccacggccgg
ctggccgcggccggcgtgatcccgcccggggccgacgcccacgcgttcgtcacgacgctc
cggcagtcggccgagacggtccgccccggcccgggcccggtgccggcggcgtccgcggag
gagaccgagaaggtgctgcgctggctggagtcgcccggcatccgcctggtcgacgtcgac
ggcgagtggacctgcccggtcgccggcgccacccggcacctcgcggtgcacgacgcggtc
aaccagtcccggctctcgctggtgccgttcgccgaccgccgcgggctcgccccggtgcac
cggccggcccgctga
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