Nocardioides sp. LMS-CY: KM427_15630
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Entry
KM427_15630 CDS
T10875
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nocl Nocardioides sp. LMS-CY
Pathway
nocl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nocl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KM427_15630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nocl03019
]
KM427_15630
Messenger RNA biogenesis [BR:
nocl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KM427_15630
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Cuticle_1
Motif
Other DBs
NCBI-ProteinID:
QWF20411
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Position
complement(3273263..3274948)
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AA seq
561 aa
AA seq
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MSHPHPELSAPGPLAQGGLRVTPLGGLGEVGRNMTAFEYDGRLLLVDCGVLFPEDHQPGI
DLILPDWSSIRDRLDDVEALVLTHGHEDHIGATPYLLRERQDIPLVGSQLTLALLGSKLR
EHRLKETVHHVVKEGDRISFGPFQLEFVAVNHSIPDALAVAIRTGAGLVLHTGDFKMDQL
PLDGRITDLRAFARLGEEGVDLFLTDSTNAETPGFTPTEKKITPVIDQVFRESNQRIIVA
CFASHVHRVQQVLDAAYAHERQVAYVGRSMVRNMGIARDLGYLKVPPGTLVDTKDLADLP
PERQVLISTGSQGEPMSALSRIAQRNHNFVHIEEGDTVLLASSLIPGNENAVFRVINGLA
RWGARVVHKGNAMVHVSGHASAGELLYCYNIVQPRNVLPVHGEIRHMLANGELARATGVE
NVVIAEDGVVVDLVDGVAEVAGKVECGYVFVDGSSVGDVTESDLKDRRILGEEGFISVIV
VVDSVSGKVAAGPEIHARGNALDGASFDEIKQPIIDALDRAISEGNTDTYQLQQTVRRVI
GRWVSNTHRRRPMIVPVVIEA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgagccacccccatcccgagctgtcggcccccggcccgctcgcgcaggggggcctgcgg
gtcaccccgctcggcgggctcggcgaggtgggccgcaacatgaccgccttcgagtacgac
ggccggctgctgctggtcgactgcggcgtgctgttccccgaggaccaccagcccggcatc
gacctgatcctccccgactggtcctcgatccgcgaccggctcgacgacgtcgaggcgctg
gtgctgacccacggtcacgaggaccacatcggcgccacgccgtacctcctgcgcgagcgg
caggacatccccctggtcggctcccagctcacgctcgcgctgctcggctccaagctccgc
gagcaccggctgaaggagacggtgcaccacgtcgtcaaggagggggaccggatctcgttc
gggccgttccagctcgagttcgtggcggtcaaccactccatccccgacgcgctcgcggtc
gcgatccgcaccggcgccggcctggtgctgcacaccggcgacttcaagatggaccagctg
ccgctcgacggccggatcaccgacctgcgggcgttcgcgcggctgggggaggagggcgtc
gacctcttcctcaccgactccaccaacgccgagacgccgggcttcaccccgaccgagaag
aagatcaccccggtcatcgaccaggtcttccgcgagtcgaaccagcgcatcatcgtggcc
tgcttcgcctcccacgtgcaccgcgtgcagcaggtgctcgacgcggcgtacgcccacgag
cgccaggtcgcgtacgtcgggcgctccatggtccgcaacatgggcatcgcccgcgacctc
ggctacctcaaggtcccgccgggcacgctggtcgacaccaaggacctcgccgacctgccg
cccgagcggcaggtgctgatctcgaccgggtcgcagggcgagccgatgagcgcgctgagc
cggatcgcgcagcgcaaccacaacttcgtgcacatcgaggagggcgacaccgtcctgctc
gcctccagcctgatccccggcaacgagaacgccgtcttccgggtgatcaacggcctggcc
cgctggggcgctcgggtcgtgcacaagggcaacgcgatggtgcacgtctccggccacgcc
agcgccggcgagctgctctactgctacaacatcgtgcagccgcgcaacgtgctgcccgtg
cacggcgagatccggcacatgctcgcgaacggcgagctggcccgggccaccggtgtcgag
aacgtcgtgatcgccgaggacggcgtcgtggtcgacctggtcgacggtgtcgcggaggtg
gccggcaaggtcgagtgcggctacgtcttcgtcgacggctcctcggtcggcgacgtcacc
gagtccgacctcaaggaccgccggatcctgggggaggagggcttcatctcggtgatcgtg
gtcgtcgactcggtcagcggcaaggtcgccgccggcccagagatccacgcgcgcggcaat
gccctcgacggcgcgtccttcgacgagatcaagcagccgatcatcgacgcgctcgaccgg
gcgatctccgagggcaacaccgacacctaccagctgcagcagaccgtgcggcgggtgatc
ggccgctgggtgagcaacacccaccgccgccggccgatgatcgtgccggtcgtgatcgag
gcctga
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