Nocardioides sp. LMS-CY: KM427_19905
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Entry
KM427_19905 CDS
T10875
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nocl Nocardioides sp. LMS-CY
Pathway
nocl03420
Nucleotide excision repair
nocl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nocl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KM427_19905 (pcrA)
03430 Mismatch repair
KM427_19905 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nocl03400
]
KM427_19905 (pcrA)
Enzymes [BR:
nocl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KM427_19905 (pcrA)
DNA repair and recombination proteins [BR:
nocl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KM427_19905 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
KM427_19905 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_11
AAA_30
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
QWF24847
LinkDB
All DBs
Position
complement(4197291..4199690)
Genome browser
AA seq
799 aa
AA seq
DB search
MSIPLPGLEAVAPAAPARRGPSREELLEGLNEPQRAAVVHEGAPLLVVAGAGSGKTRVLT
RRIAWLISERRAHPGSILAITFTNKAAAEMKERVEDLVGKRARIMWVSTFHSACVRILRK
EADKLGYKSNFSIYDAADQKRLMTLVCNDLDLDPRRYQPGALLHWVSNQKNELRDPEDAT
KDARNHLEETYAAAYTAYQRRLREANALDFDDLIMSTVHLFQAFPEVRETYRRRFRHVLV
DEYQDTNHAQYALIHQLCADDPEQSDPDAERVEPAELMVVGDADQSIYAFRGANIRNILD
FEQDFPNATSILLEQNYRSTQTILTAANSVIGHNKGRKEKRLWSDAGDGERIVGYVADDE
RDEARFVSEEIDKLTDEGAHRPGDVAVFYRTNAQSRVFEEVFIRTGMPYKVVGGVRFYER
REVRDALAYLRMLVNPADQVSLRRILNTPKRGIGDRAVACVNALAERDRITFWEALRRAQ
DAPGLATRSLTQIQGFVAMVEELQSMVDAGERADVVLETVLARSGYLTWLEESDDPQDET
RLENLAELVAVAREFAEDPLAGPSADPTDVEAGIVAPGLADFLERVALVADTDQIPDDDP
EDSGVVTLMTLHTAKGLEFPVVFLTGLEDGVFPHARALGDQPELEEERRLAYVGVTRARE
RLYISRAVVRSAWGAPSHNPGSRFLDELPVDLVDWRRTEAAQTRWSRPDLSGGQRFGEPT
AAGRRNFSAAAVRADAAARAKPAREIPSLEPGDRVLHDSFGLGTVVALEGAGEKSVASID
FGSEGVKRLLLRYAPVEKL
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatcccgctgcccggcctcgaggccgtcgcccccgccgcaccggcccgtcgcggc
cccagccgcgaggagctgctcgaaggcctcaacgagccccagcgcgccgccgtggtgcac
gagggggcgccgctgctggtggtggccggcgccgggtcgggcaagacccgggtgctcacc
cggcggatcgcgtggctgatctccgagcgccgggcccaccccggctcgatcctcgcgatc
accttcaccaacaaggccgcggccgagatgaaggagcgggtcgaggacctggtcggcaag
cgcgcccgcatcatgtgggtgtcgacgttccactcggcctgcgtgcgcatcctgcgcaag
gaggccgacaagctcggctacaagtccaacttctccatctacgacgccgccgaccagaag
cggctgatgacgctggtctgcaacgacctcgacctcgacccgcgtcgctaccagccgggc
gcgctgctgcactgggtctcgaaccagaagaacgagctgcgcgaccccgaggacgccacc
aaggacgcccgcaaccacctcgaggagacctacgccgcggcgtacacggcgtaccagcgc
cggctccgcgaggccaacgcgctggacttcgacgacctgatcatgtcgaccgtgcatctg
ttccaggcgttcccggaggtgcgcgagacctaccggcgccggttccggcacgtgctcgtc
gacgagtaccaggacaccaaccacgcgcagtacgcgctgatccaccagctctgtgcggac
gaccctgagcagtccgaccccgacgcggagcgggtcgagccggccgagctgatggtcgtc
ggcgacgccgaccagtcgatctacgccttccgcggcgccaacatccgcaacatcctcgac
ttcgagcaggacttccccaacgcgacctcgatcctgctggagcagaactaccgctccacg
cagaccatcctgaccgccgccaactcggtgatcggccacaacaagggccgcaaggagaag
cggctgtggtccgacgccggcgacggcgagcggatcgtcgggtacgtcgccgacgacgag
cgcgacgaggcccggttcgtctccgaggagatcgacaagctcaccgacgagggcgcccac
cgccccggcgacgtcgcggtgttctaccgcacgaacgcgcagtcgcgggtgttcgaggag
gtcttcatccgcaccgggatgccctacaaggtggtcggtggggtccggttctacgagcgc
cgcgaggtgcgcgacgcgctcgcctacctgcggatgctggtcaacccggccgaccaggtg
tcgctgcggcggatcctgaacacccccaagcgcggcatcggcgaccgcgccgtcgcgtgc
gtcaacgcgctggccgagcgcgaccggatcacgttctgggaggcgctgcgccgggcccag
gacgcccccggcctggccacccgctcactcacccagatccagggcttcgtggcgatggtc
gaggagctgcagtcgatggtcgacgcgggtgagcgcgccgacgtcgtcctggagaccgtg
ctcgcccgctccggctacctcacctggctggaggagagcgacgacccgcaggacgagacc
cggctggagaacctcgccgagctggtcgcggtggcccgggagttcgccgaggacccgctg
gccggcccgtcggccgacccgaccgacgtcgaggccggcatcgtcgccccgggcctggcc
gacttcctcgagcgggtcgcgctggtggcggacaccgaccagatccccgacgacgacccc
gaggactccggcgtcgtcacgctgatgacgctgcacacggcgaagggcctggagttcccc
gtcgtcttcctcaccggcctcgaggacggcgtcttcccgcacgcccgtgcgctcggcgac
cagccggagctggaggaggagcgccgcctggcgtacgtcggggtgacccgggcccgcgag
cggctctacatctcgcgtgcggtggtgcgctcggcctggggcgcgccgtcgcacaacccc
ggctcgcgcttcctcgacgagttgccggtcgatctcgtcgactggcggcgcaccgaggcc
gcccagacccggtggagccggccggacctctccggcggccagcggttcggcgaacccacc
gccgccggccggcgcaacttctcggccgccgccgtgcgcgccgacgccgcggcccgcgcc
aagccggcgcgagagatccccagcctcgagcccggcgaccgggtgctgcacgactcgttc
ggcctgggcacggtggtcgccctggagggcgcgggggagaagtccgtcgcctcgatcgac
ttcggttccgagggcgtcaagcggctgctgctgcgctatgcgccggtcgagaagctgtag
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