Nocardioides sp. LMS-CY: KM427_21170
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Entry
KM427_21170 CDS
T10875
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nocl Nocardioides sp. LMS-CY
Pathway
nocl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nocl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KM427_21170 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nocl03400
]
KM427_21170 (mfd)
Enzymes [BR:
nocl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KM427_21170 (mfd)
DNA repair and recombination proteins [BR:
nocl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KM427_21170 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
AA_kinase
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QWF24866
LinkDB
All DBs
Position
complement(4468333..4471911)
Genome browser
AA seq
1192 aa
AA seq
DB search
MQLSGLAAAVLADPTLDQAMADARGGAVPALDLTGPEALRPYVVAGLVQAGRSVLAVTAT
SREAEDLVAALGDLVDPALVAHYPSWETLPHERLSPRSDTVGRRLAVLRRLKHPGSDAAN
GPLRVVVAPVRSVLQPQVQGLADLEPVELSPGDTAPLDDVVRRLAGAAYSRVDLVEKRGE
FAVRGGIIDVFPPTEEHPLRVELWGDDVEEIRTFSVADQRTLEKVDRLWAPPCRELLLTD
DVRARAAELGRQHPQLLELTDKIAAGIAVEGMESLAPVLVDEMELLVDLMPDDTHVLVLD
PERARRRAHDLVATSEEFLGASWAAAAGGGTAPIDLGAASYREIADVRAQALGQGKPWWT
VSPFGIEIPAEVDVDVLAGAVPSHALSAKPAEAYRGEMERAIADIAGWRRAGYRVVVLHA
GHGPAERMREVLAEHDVPARVADDLQEAGDLSTDVVTITCGAAAQGFVDEANRLVVLTGE
DLSGQKASTRDMRKMPARRKRQIDPLELRAGDHVVHEQHGVGRFVEMKQREVGGAVREYL
VLEYGASKRGGPPDRLYVPADALDQVTRYVGGEAPSLDRLGGADWTKRKNKARRAVREIA
AELIKLYAARQATKGYAFGADTPWQRELEDAFPFHETPDQLSTVDEVKGDMMRTVPMDRL
VCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVTQHLSTFSERMSGFPVVLKGLSR
FQTDAEAREVMAGMADGSIDIVVGTHRLLNPDVRFKDLGLIIVDEEQRFGVEHKEQMKRL
RTSVDVLSMSATPIPRTLEMAITGIREMSTITTPPEERHPVLTYVGGYEDRQVIAAVRRE
LLREGQVFYIHNRVNSIEKAAARIRELVPEARVATAHGQMNERQLEQVMLDFWEKRFDVL
VCTTLVESGLDVSNANTMIIERSDALGLSQLHQLRGRVGRSRERAYAYFLYPSEKPLTET
AHERLATLAQHSDLGGGMAIAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVQE
FRGDKEAELDEVRIELPVDAHLPHGYIPSERLRLEMYKRLAEVRSDEDVDLINEELLDRY
GEPPVEVVSLLLVARFRARARQAGVGEVTIAGRNVRFAPVDLPDSRVVRLNRLYPKSIVK
APVSTILVPRPMTAGIGGQPLSGIALLEWARQVIDSIIDPVTDPVVKTQETK
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
gtgcagctctccggcctcgccgccgccgtcctcgccgaccccacgctcgaccaggcgatg
gccgacgcccgcggcggggccgtgccggccctcgacctcaccggccccgaggcgctgcga
ccgtacgtcgtcgcgggactggtccaggcgggccggtcggtgctggcggtgaccgccacc
tcgcgcgaggccgaggatctggtcgcggcgctcggcgacctggtcgacccggccctggtc
gcccactacccgagctgggagacgctcccgcacgagcggctcagcccgcgcagcgacacg
gtcgggcgccggctcgccgtcctgcgccggctcaagcacccgggctccgacgccgccaac
ggcccgctccgggtcgtcgtcgcgccggtgcggtcggtgttgcagccgcaggtgcagggc
ctggccgacctcgagccggtcgagctcagcccgggcgacaccgcgccgctcgacgacgtc
gtgcggcggctggccggcgcggcgtactcccgggtggacctggtggagaagcgcggcgag
ttcgcggtgcggggcggcatcatcgacgtcttcccgccgaccgaggagcacccgctgcgg
gtggagctctggggcgacgacgtcgaggagatccgcacgttctccgtcgccgaccagcgc
acactcgagaaggtcgaccggctgtgggcgccgccgtgccgcgagctgctgctcaccgac
gacgtgcgcgcccgcgcggccgagctcggccggcagcacccgcagctgctcgagctgacc
gacaagatcgcggccggcatcgccgtcgagggcatggagtccctcgccccggtgctggtc
gacgagatggagctgctcgtcgacctgatgcccgacgacacccacgtgctcgtgctcgac
cccgagcgggcccgccggcgggcgcacgacctggtggcgaccagcgaggagttcctcggt
gcgagctgggcggccgcggccggcggcggcacggcgccgatcgacctcggcgcggcgtcg
taccgcgagatcgccgacgtgcgcgcgcaggctctcggccagggcaagccctggtggacg
gtgagcccgttcggcatcgagatccccgccgaggtcgacgtcgacgtgctcgccggcgcc
gtgccgagccacgcgctctcggccaagccggccgaggcctaccgcggcgagatggagcgc
gcgatcgccgacatcgccggctggcgccgcgcgggctaccgggtcgtcgtcctgcacgcc
ggccacggcccggccgagcggatgcgcgaggtgctcgccgagcacgacgtaccggcccgc
gtcgccgacgatctccaggaggccggtgacctgtccaccgacgtcgtcacgatcacctgc
ggggccgcggcgcagggcttcgtcgacgaggccaaccggctcgtcgtgctcaccggcgag
gacctctccgggcagaaggcctcgacccgcgacatgcgcaagatgccggcgcgccgcaag
cgccagatcgacccgctcgagctgcgagccggcgaccacgtcgtgcacgagcagcacggc
gtcggccgcttcgtggagatgaagcagcgcgaggtcgggggagcggtgcgcgagtacctc
gtgctcgagtacggcgcgtccaagcgaggcggcccgcccgaccggctctacgtgcccgcc
gacgccctcgaccaggtgacccggtacgtcggcggcgaggcgccgtcgctcgaccggctg
ggcggcgccgactggaccaagcgtaagaacaaggcccgcagggcggtccgcgagatcgcc
gcggagctgatcaagctctacgccgcgcggcaggcgacgaagggctacgccttcggggcg
gacaccccgtggcagcgcgagctcgaggacgcgtttccgttccacgagacgcccgaccag
ctgagcacggtcgacgaggtcaagggcgacatgatgcgcacggtcccgatggaccggctg
gtctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaaggcg
gtccaggacggcaagcaggtcgcggtgctggtaccgaccacgctgctggtcacccagcac
ctgagcacgttctccgagcggatgagcggcttccccgtcgtgctcaagggcctcagccgg
ttccagaccgacgccgaggcgcgcgaggtgatggccggcatggccgacggctcgatcgac
atcgtcgtcggcacccaccggctgctcaaccccgacgtccgcttcaaggacctcgggttg
atcatcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagatgaagcggctg
cgcacctcggtcgacgtgctgtcgatgagcgcgacgccgatcccccgcacgctggagatg
gcgatcaccggcatccgcgagatgtccacgatcaccacgccgcccgaggagcggcacccc
gtgctcacctacgtcggcggctacgaggaccggcaggtgatcgccgccgtacgccgtgag
ctgctccgcgagggtcaggtcttctacatccacaaccgggtcaactcgatcgagaaggcc
gccgcgcggatccgcgagctggtgccggaggcccgggtcgcgaccgcgcacgggcagatg
aacgagcgccagctcgagcaggtgatgctggacttctgggagaagcgcttcgacgtgctc
gtctgcacgacgctcgtcgagtccggtctcgacgtctccaacgccaacacgatgatcatc
gagcgctcggacgccctcggcctctcccagctgcatcagctgcggggccgggtcggccgc
tcgcgggagcgggcgtacgcctacttcctctacccgtccgagaagccgctcaccgagacc
gcgcacgagcggctcgcgacgctggcccagcattccgacctcggcggtggcatggcgatc
gcgatgaaggacctcgagatccgcggtgccggcaacctgctcggcggcgagcagtccggc
cacatcgccgacgtcggcttcgacctctacgtgcggctggtcggggaggcggtgcaggag
ttccgcggcgacaaggaggccgagctcgacgaggtccgcatcgagctgccggtcgacgcc
cacctgccgcacggctacatccccagcgagcggctgcggctggagatgtacaagcggctc
gccgaggtgcgctccgacgaggatgtcgacctgatcaacgaggagctgctcgaccggtac
ggcgagccgccggtcgaggtcgtctcgctgctgctggtcgcccggttccgggcccgggcc
cgacaggcgggcgtcggggaggtcacgatcgccggccgcaacgtcaggttcgcccccgtc
gacctgcccgactcgcgggtggtccggctcaaccggctctacccgaagtcgatcgtcaag
gcgccggtcagcacgatcctggtgcctcgtccgatgaccgcaggcatcggggggcagccg
ctgtccgggatcgccctgcttgaatgggcccggcaggtgatcgactccatcatcgatccg
gtcaccgatccagtcgtcaaaacccaggagaccaagtga
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