Nocardioides sp. LMS-CY: KM427_24775
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Entry
KM427_24775 CDS
T10875
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nocl Nocardioides sp. LMS-CY
Pathway
nocl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nocl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KM427_24775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nocl03019
]
KM427_24775
03009 Ribosome biogenesis [BR:
nocl03009
]
KM427_24775
Enzymes [BR:
nocl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KM427_24775
Messenger RNA biogenesis [BR:
nocl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KM427_24775
Ribosome biogenesis [BR:
nocl03009
]
Prokaryotic type
rRNA helicases
KM427_24775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
HEM4
Motif
Other DBs
NCBI-ProteinID:
QWF24926
LinkDB
All DBs
Position
complement(5271912..5273624)
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AA seq
570 aa
AA seq
DB search
MEPEVTFADLGLAAPVLKGLAEVGYEKPSPIQAATIPPLLEGRDVVGLAQTGTGKTAAFA
LPILSRLDLAQKTPQALVLAPTRELALQVCEAFERYAAHLRGVHVLPVYGGQGYGVQLSA
LRRGVHVVVGTPGRIMDHLDKGTLDLSELRFLVLDEADEMLNMGFAEDVETILAETPEEK
NVALFSATMPAQIRRISKKYLRDPQEITVKNKTATASNIAQRYLMVSYPQKVDALTRILE
VENFEGMIVFVRTKNETEMLAEKLRARGFSAAAINGDVPQAVRERTVNQLKSAKLDILVA
TDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERYLLKHIE
KATRQPLQQMQLPTVEDVNTTRLSRFDDAITEALSQSTRIEAFRDIIGHYVREYDVPEAD
VAAALAIVAQGETPLLLDPGADDLRPPREERPGRDRADRDRGGDRGPRTRRPRGRSDVPM
ATYRIAVGKRHRVEPRQIVGALANEGGLSREDFGHIDIRGDHSLVELPEQLPGDAWDRLR
ATRISGKLIELSRDAGGPPARQKKPRHKNR
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
ctggagcccgaggtgacgttcgccgacctcggtctcgccgcgccggtgctgaaggggctg
gccgaggtcggctacgagaagccgtcgccgatccaggccgccaccatcccgccgctcctc
gagggtcgcgatgtcgtcggcctcgcgcagaccggcaccggcaagacggcggcgttcgcg
ctgccgatcctgtcgcggctcgacctggcgcagaagaccccgcaggcactggtgctcgcg
ccgacccgcgagctcgcgctgcaggtgtgcgaggcgttcgagcggtacgccgcccacctg
cgtggtgtgcacgtcctcccggtctacggcggccaggggtacggcgtccagctgtccgcg
ctgcgccggggcgtgcacgtcgtggtcggcacgccggggcggatcatggaccacctcgac
aagggcaccctcgacctgtcggagctgcggttcctcgtgctcgacgaggccgacgagatg
ctcaacatgggcttcgccgaggacgtcgagacgatcctcgccgagacgccggaggagaag
aacgtcgcgctgttctcggccacgatgccggcgcagatccggcggatctccaagaagtac
ctgcgcgacccgcaggagatcacggtcaagaacaagaccgcgaccgcgtcgaacatcgcc
cagcgctacctgatggtgagctatccgcagaaggtcgacgcgctcacccggatcctcgag
gtcgagaacttcgagggcatgatcgtgttcgtccgcaccaagaacgagaccgagatgctc
gccgagaagctgcgggcccggggtttctccgccgcggcgatcaacggcgacgtgccgcag
gcggtgcgtgagcggaccgtgaaccagctcaagtcggccaagctcgacatcctggtcgcg
accgacgtcgccgcgcgcggcctcgacgtcgagcggatcagccacgtcgtcaactacgac
atccccaccgacaccgagtcctacgtgcaccggatcggccgcaccggccgggcgggtcgc
agcggcgacgcgatctcgttcgtgaccccgcgggagcgctatctgctcaagcacatcgag
aaggccacccgccagccgctccagcagatgcagctgccgacggtcgaggacgtcaacacc
acgcgactgtcccgcttcgacgacgcgatcaccgaggcgctgtcgcagagcacccggatc
gaggcgttccgcgacatcatcggccactacgtgcgcgagtacgacgtgcccgaggccgac
gtcgcggcggccctggcgatcgtggcgcagggcgagaccccgctgctgctcgacccgggc
gccgacgacctgcggccgccgcgtgaggagcggcccggccgcgaccgggccgaccgggac
cggggtggcgaccgcggcccacgcacccgtcggccgcgggggcggtccgacgtgccgatg
gcgacgtaccggatcgcggtcggcaagcggcaccgcgtcgagccccgccagatcgtcggc
gcgctcgccaacgagggcgggctgtcccgcgaggacttcggccacatcgacatccgcggc
gaccactcgctcgtcgagctgcccgagcagctgcccggcgacgcctgggaccggctgcgc
gccacccgcatctccggcaagctcatcgagctctcccgcgacgccggcggccctcccgcc
cgccagaagaagccgcgccacaagaaccgttga
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