Nocardioides sp. QY071: QI633_15400
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Entry
QI633_15400 CDS
T10893
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nocq Nocardioides sp. QY071
Pathway
nocq03030
DNA replication
nocq03430
Mismatch repair
nocq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nocq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QI633_15400 (dnaE)
03430 Mismatch repair
QI633_15400 (dnaE)
03440 Homologous recombination
QI633_15400 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nocq03032
]
QI633_15400 (dnaE)
03400 DNA repair and recombination proteins [BR:
nocq03400
]
QI633_15400 (dnaE)
Enzymes [BR:
nocq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QI633_15400 (dnaE)
DNA replication proteins [BR:
nocq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QI633_15400 (dnaE)
DNA repair and recombination proteins [BR:
nocq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QI633_15400 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
WGX99923
LinkDB
All DBs
Position
complement(3190488..3194051)
Genome browser
AA seq
1187 aa
AA seq
DB search
MAADAGDFVHLHVHTEYSMLDGASLLDGLFTRVNDLGMPAIAMTDHGNLHGAYDFYSKAK
KYGVQPIIGIEAYITPGTQRGERRRVRWGKGDAAEEGGDDVAGGGAYTHMTMWAESTEGM
HNLFRLSSRSSLEGYYFKPRMDKEILAEHSKGIIVSTGCPSGAIQTRLRLGQWDEAVREA
AELQDIYGKESVFLELMDHGISIEKRVRDDLLRLGKELGIPPIATNDSHYNNPEDADAHD
ALICVASGKRLSDTNRLKFDGGGYYIKSAAEMRELWAGKFGMPEACDNTVAIAERCSVEF
TESTGGYMARADIPDGETEESWFRKEVWRGIEARYPGDRLTQEVKDRVEMELAIVSQKGY
CGYYLVVADFIQWSKRNGIRVGPGRGSGAGSIAAYALSITDLCPLEHGLFFERFLNPERP
SMPDFDIDFDDARRGEVIQYVSEKYGAERVAQIATFGRLKAKAAIKDAARVLDHGFAIGD
KITKAMPPDVMGKGVPLKEIFNPEHKRYNDGGEFRALYESDADVRTIYQTAVGLEGQIRN
WGVHAAGVIMSSEPLIDIVPIMARPQDGAVITQFDYPMCESLGLVKMDFLGLSNLRILED
ALANIKANKDEVVVLEELPFDNRATYELMGRGDTLGVFQLDGGGMRALLRSMLPDKFADI
TAVSALYRPGPMGADSHNKYAHRKNGRQPIEPIHPALAEALEPVLGETYGLIVYQEQVMA
IAQVLAGYSLGAADNMRRVMGKKKKAELDAQFEGFEAGMLERGYPKDAVKTLWEILVPFA
DYAFNKSHSAAYGVITYWTAYLKANYPTEYMAALLTSVKDDKDKMAIYLNECRRMKIQVL
PPDVNESAHNFTAVGRDIRFGLTAVRNVGSNVVDGIAEARVEKGRFTDFNDFLSKVPATV
CNKRVIDSLIKAGAFDDMKHLRRALVAIHETAVDQYVDIKRNEAIGQDSLFAGLGDDDGG
DGGFGVSVAIPEIDEWDKMTLLGHEREMLGLYVSDHPLLGLEHVLSNGTDCTIGQLVTDE
SRPHNSTVTVAGLVTSIQRKITKNGDPWATVTLEDLEGAIDVLLFPSSYRLAAPYLTEDA
IIRVRGQLDTDREPAQLRGQEVTVPDLERGSDGPVVISLPSTRCTGPVVAQLREVLTSHA
GLTEVRLQLLSRDSTKVMRLGDNLRVTPSVSLFADLKQLLGPGCLDR
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgacgccggggacttcgtccacctgcacgtgcacaccgagtactccatgctc
gacggagcgtcgctgctcgacgggttgttcacccgcgtcaacgacctcggcatgccggcg
atcgcgatgaccgaccacggcaacctgcacggtgcctacgacttctactccaaggcgaag
aagtacggcgtccagcccatcatcggcatcgaggcctacatcacccccggcacccagcgg
ggcgagcggcgccgggtgcgctggggcaagggcgacgcggccgaggagggcggcgacgac
gtcgccggcggtggcgcctacacccacatgacgatgtgggccgagtccaccgagggcatg
cacaacctgttccggctctcgtcgcgctcgagcctggagggctactacttcaagccgcgg
atggacaaggagatcctcgccgagcacagcaaggggatcatcgtctccaccggctgcccc
agcggcgcgatccagacccgcctgcggctgggtcagtgggacgaggcggtccgcgaggcg
gccgagctgcaggacatctacggcaaggagtccgtcttcctggagctgatggaccacggc
atctccatcgagaagcgggtccgcgacgacctgctgcgtctcggcaaggagctcggcatc
ccgccgatcgcgaccaacgactcccactacaacaaccccgaggacgccgacgcccacgac
gccctcatctgcgtcgcgtccggcaagcggctctccgacaccaaccggctcaagttcgac
ggcggcggctactacatcaagtccgcggccgagatgcgcgagctgtgggccgggaagttc
ggcatgcccgaggcgtgcgacaacacggtggcgatcgccgagcgctgctcggtcgagttc
accgagtcgaccggcggctacatggcccgcgccgacatccccgacggcgagaccgaggag
tcctggttccgcaaggaggtgtggcgcggcatcgaggcgcgctaccccggcgaccggctg
acccaggaggtcaaggaccgcgtcgagatggagctcgcgatcgtctcgcagaagggctac
tgcggctactacctcgtggtcgccgacttcatccagtggtccaagcgcaacggcatccgg
gtgggcccgggtcgtggctcgggtgcgggctcgatcgcggcgtacgccctgagcatcacc
gacctgtgccccctcgagcacggcctgttcttcgagcgcttcctcaaccccgagcgcccc
tcgatgcccgacttcgacatcgacttcgacgacgcgcggcgcggcgaggtcatccagtac
gtctccgagaagtacggcgccgagcgcgtcgcgcagatcgccaccttcggccggctcaag
gccaaggccgcgatcaaggacgccgcccgggttctcgaccacggcttcgcgatcggcgac
aagatcaccaaggcgatgccgcccgacgtcatgggcaagggcgtgccgctcaaggagatc
ttcaaccccgagcacaagcgctacaacgacggcggcgagttccgcgcgctctacgagtcc
gacgccgacgtccgcacgatctaccagacggcggtcggcctcgagggccagatccgcaac
tggggtgtgcacgcggccggcgtgatcatgtccagcgagccgctgatcgacatcgtgccg
atcatggcccgcccgcaggacggcgcggtgatcacccagttcgactacccgatgtgcgag
tcgctgggcctggtcaagatggacttcctgggcctgtccaacctgcgcatcctcgaggac
gcgctggccaacatcaaggccaacaaggacgaggtcgtcgtcctcgaggaactcccgttc
gacaaccgggccacctacgagctgatgggccggggcgacaccctgggcgtgttccagctc
gatggcggtggcatgcgcgcgctgctgcgctcgatgctgcccgacaagttcgccgacatc
accgcggtcagtgcgctctaccgccccggcccgatgggcgccgactcccacaacaagtac
gcccaccgcaagaacgggcgccagccgatcgagccgatccacccggcgctcgccgaggcg
ctcgagccggtgctgggggagacctacggcctgatcgtctaccaggagcaggtgatggcg
atcgcccaggtcctggccggctactcgctgggcgcggcagacaacatgcgccgggtcatg
ggcaagaagaagaaggccgagctcgacgcgcagttcgagggcttcgaggccggcatgctc
gagcggggctatcccaaggacgcggtcaagacgctctgggagatcctcgtcccgttcgcc
gactacgcgttcaacaagtcccactccgcggcctacggcgtcatcacctactggaccgcc
tacctcaaggccaactacccgaccgagtacatggccgcgctcctcacgtccgtcaaggac
gacaaggacaagatggcgatctacctcaacgagtgccgtcggatgaagatccaggtgctc
ccgcccgacgtcaacgagtcggcgcacaacttcaccgccgtcgggcgcgacatccgcttc
ggcctcaccgccgtgcgcaacgtcggctccaacgtcgtcgacggcatcgccgaggcccgg
gtcgagaagggccggttcaccgacttcaacgacttcctgtccaaggtgccggccaccgtg
tgcaacaagcgggtcatcgactcgctgatcaaggccggtgccttcgacgacatgaagcac
ctgcgtcgcgccctggtcgcgatccacgagaccgcggtcgaccagtacgtcgacatcaag
cgcaacgaggcgatcggccaggactcgctgttcgccgggctgggcgacgacgacgggggc
gacggagggttcggcgtgagcgtcgcgatccccgagatcgacgagtgggacaagatgacc
ctgctcggccacgagcgggagatgctcggcctctacgtctccgaccacccgctgctcggc
ctcgagcacgtcttgtccaacggaaccgactgcaccatcggccagctggtcaccgacgag
agccggccgcacaactcgacggtgacggtggccggcctggtcacctcgatccagcgcaag
atcaccaagaacggcgacccgtgggccaccgtgaccctcgaggacctcgagggcgcgatc
gacgtgctgctgttcccgagcagctaccggctcgcggcgccgtacctcaccgaggacgcg
atcatccgggtgcgcggccagctcgacaccgaccgcgagccggcgcagctgcgcggccag
gaggtcaccgtccccgacctggagcggggcagcgacggcccggtcgtgatcagcctgccc
tcgacccggtgcaccgggccggtcgtggcccagctgcgcgaggtgctgacctcccacgcc
gggctgaccgaggtgcggctccagctgctgagccgcgactccaccaaggtcatgcgactg
ggggacaatctgcgggtgactccctcggtctccctcttcgccgacctcaagcagctcctc
ggcccggggtgcctcgaccgatga
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