Nocardioides sp. QY071: QI633_17355
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Entry
QI633_17355 CDS
T10893
Name
(GenBank) DNA polymerase ligase N-terminal domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nocq Nocardioides sp. QY071
Pathway
nocq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nocq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QI633_17355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nocq03400
]
QI633_17355
Enzymes [BR:
nocq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QI633_17355
DNA repair and recombination proteins [BR:
nocq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QI633_17355
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
Rv0299_toxin
Motif
Other DBs
NCBI-ProteinID:
WGY00303
LinkDB
All DBs
Position
3589264..3590826
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AA seq
520 aa
AA seq
DB search
MGDLLERYRRKRDFTRTPEPAGAVADRTGARFVVQRHRASRLHYDLRFEIDGVLVSWAVP
KGPTLDPRARRLAVHVEDHPIEYLHFEGVIPSGEYGGGDVIVWDTGTWEPVKTDDPRAAV
RDGELHAEVHGHKLRGRLVLVRTGDEGERESWMLLHKRDAHAVDGWDPEAHPRSVLSGRT
NDDVAADPDRTWRSGVPAAEAEEVLLPDPLPDEAVASLEDLGKQGTWEVFGRRLKVTNLD
KVLFPGDPPVTKRELLAYTARIAPVALPYLRGRALNLHRYPDGADAKGFWHKQRPDHAPA
WLGAWDNPDADPGETTTYVVADEPAALVWAANFGALEWHPWTSLAARPHEPTYALVDIDP
GERTTWEEVLTLARLHRTALDHLDVLARPKVTGRRGIQVWIPVVPGYTFDDTRAWVEKLS
RTVGKVLPDLVSWKWEVRAREGRARLDYTQNAINKTLVAPYSPRPARGAPVSVPIGWGEL
DDPDLRPDRWTIRTVLDRLAVRGDPFQALLDAGQELPDIT
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacctgctcgagcggtaccggcgaaagcgcgacttcacccgcaccccggagccg
gcgggcgcggtcgcggaccggaccggcgcgcggttcgtcgtccaacggcaccgagccagc
cgcctgcactacgacctgaggttcgagatcgacggggtcctggtcagctgggcggtgccg
aaggggccgaccctcgacccgcgtgcacggcgactggcggtgcacgtcgaggaccacccg
atcgagtacctgcacttcgagggcgtgatcccctcgggcgagtacggcggcggggacgtc
atcgtgtgggacaccggcacctgggagccggtgaagaccgatgacccgcgggccgccgta
cgcgacggcgagctgcacgccgaggtccacggccacaagctgcgggggcggctggtgctg
gtccggaccggcgacgagggcgagcgtgagtcctggatgctgctgcacaagcgcgacgcg
cacgccgtcgacggctgggaccccgaggcgcacccgcgctcggtgctgagcggccgcacg
aacgacgacgtcgccgccgacccggaccgcacgtggcgctcgggtgtccctgctgccgag
gccgaggaggtgctgctgccggatccgctgcccgacgaggccgtcgcctcgctcgaggac
ctcgggaagcagggcacgtgggaggtcttcggccgcaggctcaaggtcaccaacctcgac
aaggtgctcttccccggcgatcccccggtgaccaagcgcgagctgctcgcctacacggcg
cggatcgcgcccgtggcgctcccctacctgcgcggccgcgcgctcaacctgcaccgctac
cccgacggcgccgacgccaagggcttctggcacaagcagcggcccgaccacgctcccgcg
tggctcggtgcctgggacaacccggacgccgatcccggggagacgacgacgtacgtcgtc
gcggacgagccggccgcgctggtctgggccgccaacttcggcgcgctcgagtggcacccg
tggacgtcgctggcggcgcgaccgcacgagccgacgtacgcgctggtcgacatcgacccg
ggagagcgcaccacgtgggaggaggtgctgaccctggcccggctgcaccgcaccgcgctg
gaccacctcgacgtgctcgcgcgcccgaaggtcaccgggcgccgcggcatccaggtgtgg
atcccggtcgtgccgggctacaccttcgacgacacccgggcctgggtggagaagctgtcg
cgcaccgtcggcaaggtgctgcccgacctggtgagctggaagtgggaggtccgcgcccgg
gagggccgggcccgtctcgactacacccagaacgcgatcaacaagaccctggtcgcgccg
tactcaccgcgcccggcgcgcggcgcgccggtctcggtgccgatcggctggggcgagctc
gacgacccggacctgcgcccggaccgctggacgatccggaccgttctggaccgcctggcc
gtgcgcggcgacccgttccaggcgctgctggacgcaggtcaggagctgcccgacatcacg
tga
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