Nocardioides sp. QY071: QI633_25755
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Entry
QI633_25755 CDS
T10893
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nocq Nocardioides sp. QY071
Pathway
nocq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nocq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QI633_25755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nocq03019
]
QI633_25755
03009 Ribosome biogenesis [BR:
nocq03009
]
QI633_25755
Enzymes [BR:
nocq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QI633_25755
Messenger RNA biogenesis [BR:
nocq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QI633_25755
Ribosome biogenesis [BR:
nocq03009
]
Prokaryotic type
rRNA helicases
QI633_25755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
UvrA_inter
CMS1
HEM4
adh_short
Motif
Other DBs
NCBI-ProteinID:
WGY01925
LinkDB
All DBs
Position
complement(5359079..5360809)
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AA seq
576 aa
AA seq
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MSDLASDAADQPATFADLGLGDRILKALKDIGYESPSAIQAETIPHLLEGRDVMGLAQTG
TGKTAAFALPILDQLDLAQKTPQALVLAPTRELALQVCEAFEKYAANLRGVHVLPVYGGQ
GYGVQLSALRRGVHIVVGTPGRIMDHLEKGTLDLTELRFLVLDEADEMLNMGFAEDVETI
LADTPSEKQVALFSATMPKQIKSLSAKYLKNPVEIAIERKTRTAENIKQRYLMVSYPQKV
DALTRILEVENFEGAIVFVRTKNETETLAEKLRARGYSAAAINGDIVQAQRERTVNQLKD
GKLDILVATDVAARGIDVPRISHVFNYDIPTDTEAYVHRIGRTGRAGRSGDAISFITPRE
RYLLKHIEKATRSTLEQMQLPSVDAINVSRLSRFDDQITAALESPQIDFFRDVVGHYIRE
HDVPEADVAAALAIALQGDTPLLLEEEPEPERRPRREYDDRGDRGERRGGDRDRGERGSR
DRAPRSGGNLQAYKIQVGKRHRVEPRQIVGALANEGGLDRRDFGKITIRPDYSIVELPAR
LTEDQWERLKSTRISGKLIELAKDYGPPNRSRKPRD
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaccttgccagtgacgccgcggaccagcccgccaccttcgccgacctcggtctc
ggtgaccgcatcctgaaggctctcaaggacatcggctacgagtcgccgtccgcgatccag
gccgagaccatcccccacctcctcgaggggcgcgacgtgatgggcctcgcgcagaccggc
acgggcaagaccgccgcgttcgcgctgccgatcctcgaccagctcgacctcgcgcagaag
accccgcaggcgctggtcctcgcgccgacccgcgagctcgcgctccaggtgtgcgaggcg
ttcgagaagtacgccgccaacctgcgcggcgtccacgtgctccccgtctacggcggccag
ggctacggcgtccagctgtccgcgctgcgccgcggcgtccacatcgtcgtcggcacgccc
ggacggatcatggaccacctcgagaagggcaccctcgacctcaccgagctgcgcttcctg
gtcctcgacgaggccgacgagatgctcaacatgggcttcgccgaggacgtcgagacgatc
ctcgccgacacgccctcggagaagcaggtggcgctgttctcggcgaccatgccgaagcag
atcaagtcgctgtcggcgaagtacctgaagaacccggtcgagatcgcgatcgagcgcaag
acccgcaccgccgagaacatcaagcagcgctacctgatggtcagctacccgcagaaggtc
gacgcgctgacccggatcctcgaggtcgagaacttcgagggcgcgatcgtgttcgtgcgc
accaagaacgagaccgagacgctggccgagaagctgcgcgcccgcggctacagcgcggcc
gcgatcaacggcgacatcgtgcaggcccagcgcgagcgcaccgtcaaccagctcaaggac
ggcaagctcgacatcctggtcgccaccgacgtcgcggcccgcggcatcgacgtcccccgg
atcagccacgtcttcaactacgacatccccaccgacaccgaggcctacgtccaccggatc
ggccgcaccggccgcgccggccgcagcggtgacgcgatctccttcatcaccccgcgcgag
cgctacctcctcaagcacatcgagaaggccacccgctccacgctggagcagatgcagctc
ccgagcgtcgacgcgatcaacgtctcgcgcctgagccgcttcgacgaccagatcaccgcc
gccctcgagtcgccgcagatcgacttcttccgcgacgtcgtcggccactacatccgcgag
cacgacgtgccggaggccgacgtcgccgcggcgctggccatcgcgctgcagggcgacacc
ccgctgctgctggaggaggagccggagccggagcgccgtccgcgccgggagtacgacgac
cgcggcgaccgcggcgagcgccggggcggggaccgcgaccggggtgagcggggcagccgg
gaccgtgccccgcgctcgggcggcaacctccaggcctacaagatccaggtcggcaagcgg
caccgcgtcgagccccgccagatcgtcggcgcgctcgccaacgagggcggcctcgaccgc
cgcgacttcggcaagatcaccatccgccccgactactcgatcgtcgagctgccggcccgg
ctgaccgaggaccagtgggagcggctcaagagcacccggatcagcggcaagctgatcgag
ctggccaaggactacggaccgccgaaccgctcgcgcaagccccgcgactga
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