Nocardioides sp. Arc9.136: OSR43_03405
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Entry
OSR43_03405 CDS
T10603
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nocr Nocardioides sp. Arc9.136
Pathway
nocr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nocr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OSR43_03405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nocr03021
]
OSR43_03405
03400 DNA repair and recombination proteins [BR:
nocr03400
]
OSR43_03405
Enzymes [BR:
nocr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OSR43_03405
Transcription machinery [BR:
nocr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OSR43_03405
DNA repair and recombination proteins [BR:
nocr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OSR43_03405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YlqD
Motif
Other DBs
NCBI-ProteinID:
WKN49186
LinkDB
All DBs
Position
718691..722566
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDVNFFDQLQIGLATADDIRTWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEDARHRDLSSLEGKVQLERERLEKRRDTSIEDRAKKLEED
LAALEAEGAKADQRRKVKDGAEREMKQLRDRAQREIDRLDEVWSTFKSLKVQDLMGDEML
YREMKNWFGKYFEGHMGATAIQKRLESFDIAAEVESLRDTIANGKGQKKVRALKRLKVVD
AFRKTGNKPQGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVSGPQLKLHQCGLPKQMALELFKPFVMKRLVDLSHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCSAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPSDGRPVTMPTQDMIIGLFFLTTDRDGEPGEGR
AFSSPAEAIMALDRGEISVQSRIKVRLDDALPPAGALPEGFEDGKAFTLETTLGRVLFND
TLPADYPFVNYEVGKKQLGAIVNDLAERYTKVEVAASLDALKDTGFRWATFSGVTVSIED
VVTPADKKEILSSYEAQAAKVQKQFERGLVTDEERRQELIEIWTEASNEVGKAMEKNFDR
ANPIYMMVDSGASGNMNQIRQVAAMRGLVANPKGEIIPRPIKSNFREGLTVLEYFIATHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGLPKRIGERREDGTVVKAEN
SETAAYARSAAVEVTHPETGEVLVEAGGDLGDVKIAELVAAGIEEVKVRSVLTCDARTGT
CAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVV
ELFEARSPKGRTPIAEAAGRVEIEETDKARKVLVTPDDGSEVQEYAVSKRSRLNVADGDH
IEVGHHLTSGTPDPQDVLRILGVRKAQEHLVDEVQNVYRSQGVAIHDKHIEIIVRQMLRR
VTVIESGDTNLLPSDLVDRVIFEEENRRVVSEGGKPASGRPVLMGITKASLATESWLSAA
SFQETTRVLTDAAIHGRSDSLRGLKENVIIGKLIPAGTGLERYRNIRVEPTEEARAAAYS
VTGYDSYDYEFGANGGQAVALDDFDFGSYQS
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgatgtgaacttcttcgaccagctccagatcggcctggccaccgcggacgacatc
cgcacgtggagccacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagcgtgacggcctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgctccaaggtgcgccgcgagcgcatgggccacatcgagctcgccgctccg
gtgacccacatctggtacttcaagggtgtcccgagccggctgggctacctgctcgacctg
gcgccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacctccgtggac
gaggacgcgcgtcaccgcgacctgtcctcgctcgagggcaaggtgcagctcgagcgcgag
cgcctcgagaagcgtcgcgacacctccatcgaggaccgcgccaagaagctcgaggaggac
ctcgctgccctcgaggccgagggtgccaaggccgaccagcgccgcaaggtcaaggacggc
gccgagcgggagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgcctcgac
gaggtgtggagcaccttcaagtcgctcaaggtccaggacctgatgggcgacgagatgctc
taccgcgagatgaagaactggttcggcaagtacttcgagggccacatgggcgccacggcg
atccagaagcgcctcgagtccttcgacatcgccgccgaggtcgagtcgctgcgcgacacg
atcgcgaacggcaagggccagaagaaggtccgggcgctcaagcggctcaaggtcgtcgac
gcgttccgcaagaccggcaacaagccgcagggcatggtcctcgacgccgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcggctgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgactcg
ctgttcgacaacggccgtcgtggtcgtccggtcaccggcccgggcaaccggccgctgaag
tcgctctcggacatgctcaagggcaagcagggtcgtttccgccagaacctgctcggcaag
cgcgtggactactcgggccgctcggtcatcgtgtcgggtccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggccctggagctcttcaagccgttcgtcatgaagcggctc
gtcgacctgtcgcacgcgcagaacatcaagtccgccaagcggatggtcgagcgcgcgcgc
ccggtcgtgtgggacgtcctggaagaggtcatcaccgagcacccggtgctgctcaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctgatcgagggcaag
gccatccagatccacccgctcgtctgctcggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgtccgccgaggcccaggccgaggcgcggatcctgatgctg
tcgacgaacaacatcctgaagccctcggacggtcgccccgtgaccatgccgacccaggac
atgatcatcggcctgttcttcctcaccaccgaccgtgacggcgagcccggcgagggtcgt
gccttctcgtccccggccgaggcgatcatggccctggaccgcggcgagatctcggtgcag
tccaggatcaaggtgcgcctcgacgacgccttgccgccggccggcgccctccccgagggc
ttcgaggacggcaaggcgttcacgctggagaccacgctgggccgggtgctcttcaacgac
accctccccgccgactacccgttcgtgaactacgaggtgggcaagaagcagctcggcgcg
atcgtcaacgacctggccgagcgctacaccaaggtcgaggtcgccgcgtcgctggacgcc
ctgaaggacaccggcttccgctgggccaccttctccggtgtcaccgtctcgatcgaggac
gtcgtcaccccggccgacaagaaggagatcctctcctcctacgaggcgcaggcggcgaag
gtccagaagcagttcgagcgtggtctggtcaccgacgaggagcgtcgccaggagctcatc
gagatctggaccgaggcctccaacgaggtcggcaaggcgatggagaagaacttcgaccgc
gccaacccgatctacatgatggtcgactcgggtgcctccggaaacatgaaccagatccgg
caggtcgcggcgatgcgtggcctcgtggcgaacccgaagggcgagatcatcccgcgcccg
atcaagtcgaacttccgcgagggcctgaccgtcctggagtacttcatcgcgacgcacggt
gcccgcaagggtctggcggacaccgcgctgcggaccgccgactcgggctacctgacccgt
cgtctggtggacgtctcccaggacgtcatcatccgcgaggacgactgcggcaccgagcgc
ggcctgcccaagcggatcggtgagcgccgcgaggacggcaccgtggtcaaggcggagaac
tccgagaccgcggcgtacgcccgctcggcggccgtcgaggtcacccaccccgagaccggc
gaggtgctggtcgaggcgggcggcgacctcggcgacgtcaagatcgccgagctcgtggcc
gccggcatcgaggaggtcaaggtccgctccgtgctgacctgcgacgcccgcaccggcacc
tgcgccaagtgctacggccgctcgctggccaccggcaagctcgtcgacatcggtgaggcg
gtcggcatcatcgccgcccagtcgatcggtgagcccggcacgcagctgaccatgcgtacc
ttccacaccggtggtgtggcctccgcggacgacatcacgcagggtctgccccgcgtggtc
gagctcttcgaggcccgctcgcccaagggccgcacgccgatcgccgaggcggccggtcgg
gtcgagatcgaggagaccgacaaggcccgcaaggtcctggtcacccccgacgacggctcc
gaggtccaggagtacgccgtgtcgaagcgctcgcgcctcaacgtggccgacggcgaccac
atcgaggtcggtcaccacctgacctccggtacccccgacccgcaggacgtcctgcggatc
ctgggtgtccggaaggcccaggagcacctggtggacgaggtgcagaacgtgtaccgctcg
cagggcgtggcgatccacgacaagcacatcgagatcatcgtccggcagatgctgcgccgg
gtcacggtcatcgagtccggcgacacgaacctgctgccgtccgacctcgtcgaccgcgtg
atcttcgaggaggagaaccgtcgcgtggtctccgagggcggcaagccggcctcgggtcgc
ccggtcctcatgggcatcaccaaggcctcgctggcgaccgagtcgtggctctcggcggcc
tccttccaggagaccacccgcgtcctcaccgacgcagcgatccacggccgctcggactcc
ctgcgcggtctgaaggagaacgtgatcatcggcaagctgatcccggctggtaccggcctc
gagcggtaccgcaacatccgggtggagcccaccgaggaggcccgcgccgcggcgtactcc
gtcaccggttacgactcctacgactacgagttcggagccaacgggggccaggccgtggcc
ctcgacgacttcgacttcggttcctaccagtcctga
DBGET
integrated database retrieval system
