Nocardioides sp. Arc9.136: OSR43_04355
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Entry
OSR43_04355 CDS
T10603
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nocr Nocardioides sp. Arc9.136
Brite
KEGG Orthology (KO) [BR:
nocr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nocr03019
]
OSR43_04355 (hrpA)
Enzymes [BR:
nocr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OSR43_04355 (hrpA)
Messenger RNA biogenesis [BR:
nocr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OSR43_04355 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
NACHT
HA2_N
nSTAND3
T2SSE
AAA_30
SLFN-g3_helicase
PhoH
Motif
Other DBs
NCBI-ProteinID:
WKN49365
LinkDB
All DBs
Position
911960..915838
Genome browser
AA seq
1292 aa
AA seq
DB search
MEITYPPELPVTQRRDDIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGRGPGEGGG
LIGHTQPRRIAARSVAERIAGELGTELGGPESPVGYQVRFTDRTSKATRVKLMTDGILLA
ELQRDRMLRRYDTIIIDEAHERSLNIDFLLGYLKRLLPRRPDLKLVITSATIDPERFAEH
FSDGRGRPAPIIEVSGRTYPVEVRYRPLLELPENDDEGEPIVRDQTEAVVDAVKELSAEG
PGDILVFLPGEREIRDTADALSELTGSTRGGGTEVVPLYSRLSAAEQHRVFAPHTGRRVV
LATNVAETSLTVPGIRYVVDTGVARISRYSLRTKVQRLPIEPISQASANQRSGRCGRVAA
GIAIRLYSEEDFTGRPEFTDPEILRTNLASVILQMASLGLGDLGRFPFVEPPDRRNITAG
VQLLEELGALAVQAGTEDEGRAGQRLTRLGRRLARLPIDPRLARMVLEAERLGCVREVVV
IAAALSLQDPRERPGPDHPAEQARADQLHARFKVEGSDFLTWLELWRYLKQQQKDLSSSA
FRRLCRAEHLNYLRVREWQDFESQLRQVCKEMKIDVGHPADVPDADGIHQALLSGLLSHI
GLLEERDKKEKAGERRRGPREYLGARGARFAIFPGSGLARKNPTYLMAGELVETSRLWAR
QNAAIKPEWAERLAGDLVKRTWSEPHWSKKRAAVMAYERATLYGVPLVADRLVSYGKVDP
VVSRELFIRHALVQGEWHTRHRFLAENKRLLEEAEELEHRARRRDIVVDEETLFDFYDAR
VGAEVVSGAHFDQWWKRERQGRPELLTFDPSMLTHDTAEEVREADYPQEWQAEGLTFPIS
YHFEPGTVEDGLTIDVPVATLNRVAAEDFSWNVPGLREELVTELIRSLPKNLRVSFVPAP
NKAREFLAAVPPGEEPLLDALERWCRSTTGVVVPREAWDWSKVPEHLRPTYRVVDEQGRE
QARGKDLEALKAPLRPRFRRALEEVATESGLTRTGATTWDFGTVDASFTQKRAGHEVKAH
PALVDEGSTVGLQVFGSADEQEARHRLGVVRLLLLDTPSPVKAVLDSLTNHEKLALAGSP
YPSVGALLEDCRRAVVVDLVDARPTVRDRAAYDALRTLAAADQEARLRAVVADVIRVLDL
WRQADKALSGRAEMTMLPALSDLKAQLARLVHPGFVGEAGAAQLRSYPRYLQALLQRRTR
LDEGWAAVDRDRRLMDQVADLQDAWQHATDALAPGRPPGAALRQVRWMLEEYRVSLWAQQ
LGTATPVSDQRIRKALQQASGSGPAGGSGGRA
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
gtggagatcacctacccgccggagctgccggtcacccagcgccgcgacgacatcgcggcc
gcgatccgggaccaccaggttgtgatcgtggccggcgagaccggttccggcaagaccacc
cagctgcccaagatctgcctcgagctcggccggggccgcggccccggcgagggcggcggg
ctcatcgggcacacccaaccgcggcggatcgccgcccggtcggtcgccgagcgcatcgcc
ggcgagctcggcaccgagctcggcgggcccgagagcccggtgggctaccaggtgcggttc
accgaccggacctcgaaggcgacccgggtcaagctgatgaccgacggcatcctgctcgcc
gagctgcagcgcgaccggatgctgcgcaggtacgacacgatcatcatcgacgaggcgcac
gagcgcagcctcaacatcgacttcctgctcggctacctcaagcggctgctgccccggcgc
cccgacctcaagctggtcatcaccagcgccaccatcgaccccgagcggttcgccgagcac
ttctccgacggccgcgggcgacccgcaccgatcatcgaggtctcgggccgcacctacccg
gtcgaggtccgctaccggccgctgctggagctgccggagaacgacgacgagggcgagccg
atcgtccgcgaccagaccgaggcggtcgtcgacgcggtcaaggagctctccgccgaggga
cccggcgacatcctggtgttcctccccggggagcgggagatccgcgacaccgccgacgcg
ctctccgagctcaccggctccacccgcggcggcggcaccgaggtcgtccccctctacagc
cggctctccgccgccgagcagcaccgcgtcttcgcgccgcacaccggccgccgggtcgtc
ctggccaccaacgtcgcggagacctcgctgaccgtcccggggatccggtacgtcgtcgac
accggcgtcgcgcggatctcgcgctactccctgcgcaccaaggtccagcggctgcccatc
gagccgatcagccaggcctcggccaaccagcgctccggccgctgcggccgcgtcgccgcc
ggcatcgcgatccggctgtactccgaggaggacttcaccgggcgcccggagttcaccgac
cccgagatcctgcggaccaacctggccagcgtcatcctccagatggcgagcctcggcctc
ggcgacctcggccggttcccgttcgtcgagccgccggaccgccgcaacatcaccgccggc
gtgcagctgctcgaggagctcggcgccctggccgtgcaggccggcaccgaggacgagggc
cgggccggccagcggctgacccggctcggccgccgcctggcccggctgcccatcgacccg
cgcctggcgcggatggtcctggaggccgagcggctcggctgcgtgcgcgaggtggtcgtg
atcgcggccgcgctgtcgctgcaggacccgcgcgaacggcccggccccgaccaccccgcc
gagcaggcccgggccgaccagctgcacgcccggttcaaggtcgagggcagcgacttcctc
acctggctcgagctgtggcgctacctcaagcagcagcagaaggacctcagcagcagcgct
ttccgtcggctgtgtcgtgccgagcacctcaactacctgcgcgtccgcgagtggcaggac
ttcgagtcccagctgcggcaggtgtgcaaggagatgaagatcgacgtgggccatcctgcc
gacgtccccgacgccgacgggatccaccaggcgctgctctccggcctgctctcccacatc
ggcctgctcgaggagcgggacaagaaggagaaggcgggggagcgccggcggggtccgcgc
gagtacctcggcgcccgcggcgcgcggttcgcgatcttccccggcagcgggctggcgcgg
aagaacccgacgtacctcatggccggcgagctcgtcgagaccagccggctgtgggcccgg
cagaacgccgcgatcaagcccgagtgggccgagcggctggccggcgacctggtcaagcgc
acctggagcgagccgcactggagcaagaagcgcgcggccgtcatggcctacgagcgggcg
acgctgtacggcgtgccgctggtcgccgaccggctggtgtcctacggcaaggtcgacccg
gtcgtctcccgcgagctgttcatccggcacgcgctcgtgcagggcgagtggcacacccgg
caccggttcctggccgagaacaagcggctgctcgaggaggccgaggagctcgagcaccgc
gcccggcgccgcgacatcgtcgtcgacgaggagacgctgttcgacttctacgacgcccgc
gtgggcgccgaggtcgtcagcggcgcgcacttcgaccagtggtggaagcgggagcggcag
gggcgccccgagctgctgacgttcgacccctcgatgctgacccacgacaccgccgaggag
gtccgcgaggccgactacccgcaggagtggcaggccgagggcctcacctttccgatcagc
taccacttcgagccgggcacggtggaggacggcctcaccatcgacgtgccggtcgcgacg
ctgaaccgggtcgcggccgaggacttctcctggaacgtgccgggcctgcgcgaggagctg
gtcaccgagctgatccgcagcctgccgaagaacctgcgggtcagcttcgtcccggcaccc
aacaaggcgcgggagttcctcgccgcggtgccgccgggggaggagccgctgctcgacgcg
ctcgagcggtggtgccgctccacgaccggcgtggtcgtgccgcgggaggcgtgggactgg
tccaaggtccccgagcacctgcggccgacgtaccgcgtcgtcgacgagcagggtcgtgag
caggcccggggcaaggacctcgaggcgctcaaggccccgctccggccgcggttccgccgg
gcgctggaggaggtcgccaccgagagcgggctgacccgcaccggcgccacgacgtgggac
ttcgggacggtggacgcctcgttcacccagaagcgcgccggccacgaggtcaaggcccat
cccgcgctcgtcgacgaggggtcgacggtcggcctccaggtcttcgggtccgccgacgag
caggaggcccggcaccgcctcggcgtcgtccggctgctgctcctcgacacgccctcgccg
gtcaaggcggtcctggactccctcaccaaccacgagaagctcgcgctggccggctcgccg
tacccgtcggtcggtgcgctgctcgaggactgccgtcgcgcggtcgtggtggacctggtc
gatgcccggcccacggtgcgcgaccgcgcggcgtacgacgcgctccgcacgctggcggcc
gccgaccaggaggcgcggctgcgcgccgtggtggccgacgtgatccgcgtgctcgacctg
tggcgccaggccgacaaggcgctgagcggccgcgcggagatgacgatgctgcccgcgctg
tcggacctcaaggcacagctcgcgcggctggtgcaccccggcttcgtcggcgaggccggg
gccgcccagctgcggtcctacccccgttacctgcaggcgctgctgcagcggcggacccgc
ctcgacgagggctgggccgcggtcgaccgcgaccggcgcctgatggaccaggtcgcggac
ctgcaggacgcctggcagcacgccaccgacgcgctggcgccgggacgtccgccgggcgcc
gcgctgcgccaggtccggtggatgctcgaggagtaccgcgtctccctgtgggcccagcag
ctgggcaccgccaccccggtcagcgaccagcgcatccgcaaggcgctgcagcaggccagc
ggctcgggcccggccggtggctcgggcgggcgggcgtag
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