Nocardioides sp. Arc9.136: OSR43_06640
Help
Entry
OSR43_06640 CDS
T10603
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nocr Nocardioides sp. Arc9.136
Pathway
nocr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nocr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSR43_06640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nocr03019
]
OSR43_06640
03009 Ribosome biogenesis [BR:
nocr03009
]
OSR43_06640
Enzymes [BR:
nocr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OSR43_06640
Messenger RNA biogenesis [BR:
nocr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OSR43_06640
Ribosome biogenesis [BR:
nocr03009
]
Prokaryotic type
rRNA processing factors
OSR43_06640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
WKN49799
LinkDB
All DBs
Position
1367942..1371442
Genome browser
AA seq
1166 aa
AA seq
DB search
MADDDLQVAPTDTTVGTTPGAVPGDTPEGDAAPARKTAARKSAAKKAPAAKKATAAKTTA
AKKTTAKRTAKKAAVAAEAELPIADAAPVEAPGDAPVDVAPEAVDAVGTEVAAEAGEAPP
AKKAAAKRTAKKTTGKKASTRKTAAAKAADADAPVEQPADQAPVEQPADQAPAEPTAEPA
TEAARSAAVPLFQAPEPVKAPARRTRKKAVAAPAPVAEVEDEAVDGAAAGETDEAELTEV
APGEPTVEPPADADDSEDDTESGTDTDDADTESDSESDTDEDQDQDQDGEGGGNGRRRRR
RGGRRRRKSGGGGNGESGEGGSEATAEDDEAPAAGRNQRGRGQGGQSGNGSGDTSGDKSG
DASGQAEDETSEQGKDEPESGEGSSSRRRRRRRRSGEGGDANEGGEDSEKTVTRVRQGRT
GEDQITAVSGSTRLEAKKQRRREGREAGRRRAPIVSEAEFLARREAVDRVMIIRQRDELT
QIGVLEDKVLVEHYVARESQTSLIGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEVN
WSALGHREGQPRKIESVLSSGQSVLVQVTKDPIGHKGARLTSQVSLAGRFLVYVPDGTTS
GISRKLPDTERGRLKALLKEIVPDTAGVIVRTAAEGASEDELTRDVERLKARWEDIEKKA
KGSAPQLLYGEPDLTLKVVRDLFTEDFSRLVIEGQDAWDTVQGYVQHVAPDLAERLERYE
PSEHDGKDVFAAHRVEEQIAKALDRKVWLPSGGSLIIDRTEAMTVIDVNTGKFTGSGGNL
EETVTKNNLEAAEEVVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTRHQ
VAEVTSLGLVQMTRKRIGTGLVESFSENCEHCQGRGVVIHDAPVEARKGAEDEGRGRSGR
RRGGKGRGDDDQQQGSGKQNGGQHGGQHGGQDGGAKVPTPAELAAMARHDEKQADQKQAD
QKQADQKQADQKQADQKQADQKQADVPARVEPTADPAKQPAAEQAPEQAAGSAPEPAAEA
PAVPLDQAPAEPAAPRVVTRTRRRSASRPAGQPATVTVSEPVSISEPASPEAPATAEAVE
PLETTPATPVETPPPPRVVTRTRGRSATRPAGPPAGAQAGGGAAVDGAAATDGQASGQDS
GQDSGQGVDDSSVEAVPVKKRSPRKR
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgacgacctgcaggtcgcccccaccgacaccaccgtgggcaccacccccggc
gccgtcccgggggacacccccgagggcgacgccgcgccggcgcgcaagaccgccgcgcgc
aagagcgcggcgaagaaggcgcccgccgcgaagaaggcgacggcggccaagaccaccgcc
gccaagaagaccaccgccaagcggaccgccaagaaggcagcggtcgccgccgaggccgag
ctcccgatcgcggacgccgctccggtcgaggcgcccggcgacgctccggtcgacgtcgcg
cccgaggcggtcgacgcggtcggcaccgaggtggctgccgaggcgggcgaggcgccgccg
gcgaagaaggcggccgccaagcgcaccgcgaagaagaccacgggcaagaaggccagcacg
cgcaagacggccgccgccaaggccgccgacgccgacgcgcccgtcgagcagcccgccgac
caggcgcccgtcgagcagcccgccgaccaggcgccggccgagccgaccgccgagcccgcg
accgaggcggcccgcagcgccgccgtaccgctcttccaggcgcccgagcccgtcaaggcg
ccggcacgccgtacccgcaagaaggccgtcgccgccccggcgccggtcgccgaggtcgag
gacgaggccgtcgacggcgcggccgccggcgagaccgacgaggccgagctgaccgaggtc
gcccccggcgagccgacggtcgagccgcccgcggacgccgacgacagcgaggacgacacc
gagtcgggcaccgacaccgacgacgcggacaccgagtcggacagcgagtcggacaccgac
gaggaccaggaccaggaccaggacggcgagggtggcggcaacggccgtcgtcggcgccgt
cgcggcggtcgccgccgtcgcaagtccggcgggggcggcaacggtgagtccggcgagggc
ggctccgaggccaccgccgaggacgacgaggccccggcggccggccgcaaccagcgcggc
aggggccagggcgggcagtccgggaacggctccggcgacacgtcgggcgacaagtccggc
gatgcctccggccaggccgaggacgagacgtctgagcagggcaaggacgagccggagtcc
ggcgagggctcctcctcgcggcgccgccggcgtcgccgccgctcgggcgagggcggggac
gccaacgagggtggcgaggactcggagaagaccgtcacgcgggtccgccagggccgcact
ggcgaggaccagatcaccgcggtctccggctccacccgcctcgaggccaagaagcagcgc
cgtcgcgagggccgcgaggccggccgccgccgtgcgccgatcgtgagcgaggccgagttc
ctggcccgccgcgaggccgtcgaccgggtcatgatcatccgccagcgcgacgagctcacc
cagatcggcgtgctcgaggacaaggtgctcgtcgagcactacgtcgcccgcgagtcgcag
acctcgctgatcggcaacgtctacctcggtcgcgtccagaacgtcctgccctcgatggag
gcggcgttcatcgacatcggcaagggccgcaacgcggtgctctacgccggcgaggtcaac
tggtccgcgctcggccaccgcgagggccagccccgcaagatcgagtcggtgctctcctcg
ggccagtcggtgctcgtccaggtcaccaaggacccgatcggccacaagggcgcccggctg
accagccaggtcagcctcgccggccggttcctggtctacgtgcccgacggcaccaccagc
ggcatctcccgcaagctgcccgacaccgagcgcggccgcctcaaggcgctgctcaaggag
atcgtccccgacaccgccggggtgatcgtgcggaccgccgccgagggcgccagcgaggac
gagctgacccgcgacgtcgagcggctcaaggcgcgctgggaggacatcgagaagaaggcc
aagggcagcgccccgcagctgctgtacggcgagccggacctgaccctcaaggtggtccgc
gacctgttcaccgaggacttctcccggctcgtcatcgagggccaggacgcctgggacacc
gtgcagggctacgtccagcacgtcgccccggacctcgccgagcggctggagcgctacgag
ccctccgagcacgacggcaaggacgtcttcgccgcccaccgggtcgaggagcagatcgcc
aaggcgctcgaccgcaaggtctggttgccctccggcgggtcgctgatcatcgaccgcacc
gaggcgatgacggtcatcgacgtcaacaccggcaagttcaccggctccgggggcaacctc
gaggagacggtcaccaagaacaacctggaggcggccgaggaggtcgtgcgccagctccgg
ctgcgcgacatcggcggcatcatcgtcgtcgacttcatcgacatggtcctggagtccaac
cgcgacctggtgctgcgccgcctcgtcgagtgcctgggccgcgaccgcacgcgccaccag
gtcgccgaggtgacctcgctcgggctcgtgcagatgacccgcaagcgcatcggcaccggc
ctggtcgagtcgttctcggagaactgcgagcactgccagggacgcggcgtggtcatccac
gacgcgcccgtcgaggcccgcaagggtgccgaggacgagggtcgcggtcgcagcggccgt
cgccgcggcggcaagggccggggcgacgacgaccagcagcaggggtcgggcaagcagaac
ggcggccagcacggtggccagcacggtggccaggacggcggcgcgaaggtgccgacgccg
gcggagctcgccgcgatggcgcgccacgacgagaagcaggccgaccagaagcaggccgac
cagaagcaggccgaccagaagcaggccgaccagaagcaggccgaccagaagcaggccgac
cagaagcaggccgacgtcccggcgcgggtcgagccgacggccgaccccgcgaagcagccg
gccgccgagcaggccccggagcaggctgctgggtcggcacccgagcccgctgcggaggca
cctgccgtgccgctcgaccaggcgccggccgagccggcggcgccccgggtggtgacccgc
acccgtcgccgttcggccagccgtccggccggccagcccgccaccgtcacggtgagcgag
ccggtctcgatcagcgagccggcctccccggaggccccggccaccgccgaggccgtcgag
ccgctcgagacgaccccggcgacgccggtggagacgccgcccccgccgcgtgtggtgacc
cgcacgcgcggtcgcagcgccacccgtccggccggtccgcccgcaggggcccaggccggc
ggtggggccgccgtggacggcgccgcggccaccgatggccaggcctcgggccaggactcc
ggccaggactccggccagggcgtggacgactcctcggtcgaggccgtgcccgtgaagaag
cggagcccgcgcaagcgctga
DBGET
integrated database retrieval system
