Nocardioides sp. Arc9.136: OSR43_12120
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Entry
OSR43_12120 CDS
T10603
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nocr Nocardioides sp. Arc9.136
Pathway
nocr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nocr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSR43_12120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nocr03019
]
OSR43_12120
03400 DNA repair and recombination proteins [BR:
nocr03400
]
OSR43_12120
Enzymes [BR:
nocr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OSR43_12120
Messenger RNA biogenesis [BR:
nocr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OSR43_12120
DNA repair and recombination proteins [BR:
nocr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OSR43_12120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HEM4
DUF3553
Tudor_1_RapA
DUF7115
Motif
Other DBs
NCBI-ProteinID:
WKN46788
LinkDB
All DBs
Position
complement(2483928..2485544)
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AA seq
538 aa
AA seq
DB search
MTSQQLLTRVEKTAREVFGHDHLLGGQADATTALLSGHDVLLVSPTGSGKSLVYQAAGVL
TDGCTLVVSPLLALQQDQVDSIRSAPGGLTACRLSSAESEAEKREVLERATAGEVDFLFC
SPEQLANDEVRAAVAAAGIGLVAVDEAHCVSAWGHDFRPDYFRLGELLAELADEQGTPPR
VVAMTATAAPPVQDDIVARLGMREPRTVLTGFARDNIALDVVRVVEEADQRTAVLELVAA
TPGAGIVYCRTRPAAEEYAAALADAGRRTAVYHAGLSHRRREETHEAFMADEVEVVVATS
AFGMGIDKPDIRFVVHAQVPESPDTYYQEVGRAGRDGEPASATLVYRPEDLALGKFFSGG
VPRKKDVHAVLRAAGEVGTDPKDVAGAAGFGPRKTGRILNLLVLVHETRPEANRPDDAVA
AVVDIAESHRRLERSRVDMMRGYAETDRCRSAYLQGYFGEQAEHRCGRCDNCRAGIAEDP
ADEQDAAYPVQSEVRHEEFGPGVVTDVEDDRVTVLFESVGYRTLSLDVVEEHELLQLA
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcccagcagctcctgaccagggtcgagaagacggcccgcgaggtcttcggccac
gaccacctcctcggcggccaggccgacgcgacgaccgccctgctctcgggccacgacgtg
ctgctggtctccccgacgggctcgggcaagtcgctggtctaccaggcggccggggtgctg
accgacggctgcacgctggtggtctccccgctcctcgcgctgcagcaggaccaggtcgac
agcatccggtccgcgcccggagggctgaccgcgtgccggttgagctcggcggagtccgag
gcggagaagcgcgaggtcctcgagcgggccaccgcgggcgaggtcgacttcctgttctgc
tcacccgagcagctggccaacgacgaggtgcgcgccgccgtcgccgccgcggggatcggc
ctggtcgccgtggacgaggcccactgcgtctcggcttggggccacgacttccggcccgac
tacttccggctcggcgagctgctggccgagctcgccgacgagcagggcactccgccccgg
gtggtcgccatgaccgccaccgcggcgccaccggtccaggacgacatcgtcgcccggctg
gggatgcgcgagccccgcacggtgctcaccgggttcgcccgggacaacatcgccctcgac
gtcgtccgggtcgtcgaggaggccgaccagcgcacggcggtcctcgagctggtcgccgcg
accccgggcgccggcatcgtctactgccgcacccgccccgccgccgaggagtacgccgcg
gcgctggccgacgcggggcgccgcacggccgtctaccacgccggtctgtcccaccgccgc
cgcgaggagacccacgaggcgttcatggccgacgaggtcgaggtggtcgtggccacctcg
gcgttcggcatgggcatcgacaagcccgacatccgcttcgtcgtgcacgcccaggtcccc
gagtcgccggacacctactaccaggaggtcggccgggccggccgggacggcgagcccgcg
tccgccaccctggtctaccggcccgaggacctcgcgctgggcaagttcttctccggcggc
gtcccgcggaagaaggacgtccacgccgtcctccgggcggccggcgaggtcggcaccgac
cccaaggacgtcgccggggcggccgggttcggtccgcgcaagaccggccgcatcctcaac
ctgctcgtcctcgtccacgagacccggcccgaggcgaaccggcccgacgacgcggtcgcg
gcggtcgtcgacatcgccgagtcgcaccgccggctggagaggtcccgcgtcgacatgatg
cgcgggtacgccgagaccgaccgctgccggtcggcgtacctccagggctacttcggcgag
caggccgagcaccggtgcgggcgctgcgacaactgccgggccggcatcgccgaggacccc
gccgacgagcaggacgcggcgtacccggtgcagtcggaggtgcggcacgaggagttcggt
cccggcgtggtgaccgacgtcgaggacgaccgggtcaccgtgctcttcgagtcggtgggc
taccggacgctctcgctcgacgtcgtcgaggagcacgagctcctgcagctggcctga
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