Nocardioides sp. Arc9.136: OSR43_12960
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Entry
OSR43_12960 CDS
T10603
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nocr Nocardioides sp. Arc9.136
Pathway
nocr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nocr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSR43_12960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nocr03019
]
OSR43_12960
Messenger RNA biogenesis [BR:
nocr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OSR43_12960
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WKN46946
LinkDB
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Position
complement(2674116..2675801)
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AA seq
561 aa
AA seq
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MSHPHPELSEPPALPQGGLRVIPLGGLGEVGRNMTVFEYDGRLLVVDCGVLFPEDHHPGV
DLILPDFGPIRDRLDRIEALVLTHGHEDHIGATPYLLRERGDIPLVGSELTLALLDSKLR
EHRLRETVHHRVSEGDRISFGPFDLEFVAVNHSIPDALAVAIRTGAGMVLHTGDFKMDQL
PLDGRITDLRAFARLGEEGVDLFLTDSTNAETPGFTPAEKSITPVIDQVFRESSQRIIVA
CFASHVHRVQQVLDAAHAHERQVAYVGRSMVRNMAIARDLGYLKVPPGTLVDTKDLADLP
PQHQVLISTGSQGEPMSALSRIAQRSHNFVHLEEGDTVLLASSLIPGNENAVYRVINGLA
RWGARVVHKGNALVHVSGHASAGELLYCYNIVKPRNVLPVHGEIRHLLANRDLARATGVE
NVVVAEDGVVVDLVDGVASITGKVECGYVFVDGSSVGDITESDLKDRRILGEEGFISVIV
VMDSVSGKVSGGPEIHARGFVEDAVDFDEIKQPIIDALDRAVAEGNTDTYQLQQTVRRVI
GRWVSGTHRRRPMIIPVVIES
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagccacccgcaccctgagctgtccgaaccgccggcactgccgcaggggggcctccgg
gtcatcccgctcggcggcctcggcgaggtcggccgcaacatgaccgtcttcgagtacgac
ggccgcctgctggtcgtcgactgcggcgtgctgttccccgaggaccaccaccccggcgtc
gacctgatcctgccggacttcggcccgatccgggaccggctggaccggatcgaggccctg
gtgctgacccacgggcacgaggaccacatcggcgcgacgccgtacctcctccgcgagcgc
ggcgacatcccgctcgtcggctccgagctcaccttggcgctgctggactccaagctgcgc
gagcaccgcctgcgcgagaccgtgcaccaccgggtctcggagggcgaccggatcagcttc
ggtcccttcgacctggagttcgtcgcggtcaaccactcgatcccggacgcgctcgcggtg
gcgatccggaccggcgccgggatggtgctccacaccggcgacttcaagatggaccagctg
ccgctggacggccggatcaccgacctgcgggcgttcgcccggctgggggaggagggcgtc
gatctcttcctcaccgactccaccaacgccgagacccccggcttcaccccggcggagaag
tcgatcaccccggtcatcgaccaggtgttccgcgagtcctcccagcgcatcatcgtcgcc
tgcttcgcctcccacgtgcaccgcgtccagcaggtgctcgacgcggcgcacgcccacgag
cgccaggtggcgtacgtcggccgctcgatggtccgcaacatggccatcgcgcgcgacctg
ggctacctcaaggtgccgccggggacgctggtcgacaccaaggacctcgccgacctcccg
ccgcagcaccaggtgctgatctccaccggctcccagggcgagccgatgtcggcgctgagc
cggatcgcccagcgcagccacaacttcgtccacctcgaggagggcgacaccgtgctgctc
gcctcgagcctcatcccgggcaacgagaacgccgtctaccgcgtgatcaacggcctcgcc
cgctggggtgcccgggtcgtgcacaagggcaacgcgctcgtccacgtctcggggcacgcc
agcgccggcgagctgctctactgctacaacatcgtcaagccgcgcaacgtgctgcccgtc
cacggcgagatccggcacctgctggccaaccgcgacctggccagggcgaccggcgtggag
aacgtcgtcgtcgccgaggacggcgtcgtggtcgacctggtcgacggcgtcgccagcatc
accggcaaggtcgagtgcggctacgtcttcgtcgacggctcctcggtcggcgacatcacc
gagtccgacctcaaggaccgccggatcctcggcgaggaggggttcatctcggtgatcgtg
gtgatggactccgtcagcggcaaggtctccggcgggccggagatccacgcccggggcttc
gtcgaggacgccgtggacttcgacgagatcaagcagcccatcatcgacgcgctcgaccgg
gcggtcgccgagggcaacaccgacacctaccagctgcagcagaccgtacggcgcgtgatc
ggccgctgggtcagcggcacgcaccgccggcggccgatgatcatcccggtggtcatcgag
tcctga
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