Nocardioides sp. Arc9.136: OSR43_20210
Help
Entry
OSR43_20210 CDS
T10603
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nocr Nocardioides sp. Arc9.136
Pathway
nocr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nocr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSR43_20210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nocr03019
]
OSR43_20210
Messenger RNA biogenesis [BR:
nocr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OSR43_20210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
NADase_NGA
Motif
Other DBs
NCBI-ProteinID:
WKN50698
LinkDB
All DBs
Position
complement(4186553..4188238)
Genome browser
AA seq
561 aa
AA seq
DB search
MSHPHPELQKPPRLPQDGLRVVGLGGLGEIGRNMTVFEHRGKLLVVDCGVLFPEEHQPGI
DVILPDFSWIRDRLDSVVGIVLTHGHEDHIGGVPYLLRERADIPVIGSRLTLALIREKLK
EHRIVPDLREVAEGDRSPFGPFDLEFLAVNHSIPDGLAVAIRTKAGLVLHTGDFKMDQFP
LDRRITDLRGFARLGEEGVDLFLTDSTNAEVPGFTMSERDLAPAIEQVFRTAPRRIIVSS
FASHVHRIQQVLDTSHAHGRKVAFVGRSMVRNMGIAQDLGYLKVPQGLIVPLDQLERLPA
HKATLICTGSQGEPMAALARMANRDHKIRVGEGDTILMASSAVPGNETAISGLINNLSRW
GANVVHKGNAKVHVSGHASAGELVYCYNIVKPRNVMPVHGEWRHLKANASLAIDTGVPED
HVVLAEDGVVVDLVKGHAKVVGKVRAGNVYVDAQTVGGATEATLKDRRTLAEEGVVTVLV
IVDADTGGLADPPDFSVRGFVHEPKAFDPAVQVIEKTLARAAAEGIGDPQQLEQLLSREV
GRWAHRTFRRSPLIIPLVIDA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgagccacccgcaccccgagctccagaagccaccccggctgccccaggacggcctccgc
gtcgtcggtctcggggggctcggcgagatcggccggaacatgaccgtcttcgagcaccgc
gggaagctgctcgtcgtcgactgcggcgtgctcttccccgaggagcaccagccgggcatc
gacgtgatcctgcccgacttcagctggatccgggaccgcctggactcggtggtcggcatc
gtgctcacccacggccacgaggaccacatcggcggggtgccgtacctcctgcgcgagcgc
gccgacatccccgtcatcgggtcgcggctgacgctggcgctgatccgggagaagctcaag
gagcaccggatcgtcccggacctgcgcgaggtcgccgagggcgaccggtcgccgttcggc
ccgttcgacctggagttcctcgccgtcaaccactcgatccccgacgggctcgcggtggcg
atccgcacgaaggccggcctggtgctgcacaccggcgacttcaagatggaccagttcccg
ctggaccgccggatcaccgacctgcgcggcttcgcccggctcggcgaggagggcgtggac
ctgttcctcaccgactccaccaacgccgaggtccccggcttcaccatgtccgagcgcgac
ctcgcgccggccatcgagcaggtcttccgcaccgcgccgcgccggatcatcgtgtccagc
ttcgcgagccacgtgcaccgcatccagcaggtgctcgacacctcgcacgcgcacgggcgc
aaggtcgccttcgtcggccgctccatggtccgcaacatggggatcgcccaggacctcggc
tacctcaaggtgccccagggcctgatcgtgccgctcgaccagctcgagcggctgcccgcg
cacaaggcgacgctgatctgcaccggctcgcagggcgagccgatggcagcgctcgcccgg
atggcgaaccgcgaccacaagatccgcgtcggcgagggcgacaccatcctgatggccagc
tccgccgtgccgggcaacgagaccgcgatctcggggctgatcaacaacctcagccgctgg
ggcgcgaacgtcgtgcacaagggcaacgcgaaggtgcacgtgtcgggccacgccagcgcc
ggtgagctcgtctactgctacaacatcgtcaagccgcgcaacgtgatgccggtgcacggc
gagtggcgccacctcaaggccaacgcctccctggcgatcgacaccggggtccccgaggac
cacgtggtgctcgccgaggacggtgtcgtcgtcgacctggtcaaggggcacgcgaaggtc
gtcggcaaggtccgcgcgggcaacgtgtacgtcgacgcgcagaccgtcggcggggcgacc
gaggcgacgctgaaggaccgccggaccctcgccgaggagggcgtggtgacggtgctggtc
atcgtcgacgccgacaccggcgggctggccgacccgccggacttctcggtccgcggcttc
gtccacgagccgaaggccttcgacccggccgtccaggtgatcgagaagacgctggcccgc
gcggccgccgagggcatcggcgacccccagcagctcgagcagctgctcagccgggaggtc
ggccgctgggcgcaccgcaccttccgccgcagcccgctgatcatcccgctggtcatcgac
gcctga
DBGET
integrated database retrieval system
