Nocardioides sp. WV_118_6: ABFU82_00790
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Entry
ABFU82_00790 CDS
T10638
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nocw Nocardioides sp. WV_118_6
Pathway
nocw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nocw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABFU82_00790 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nocw03400
]
ABFU82_00790 (mfd)
Enzymes [BR:
nocw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABFU82_00790 (mfd)
DNA repair and recombination proteins [BR:
nocw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABFU82_00790 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
PqqD
AAA_22
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
XBB67874
LinkDB
All DBs
Position
176905..180417
Genome browser
AA seq
1170 aa
AA seq
DB search
MSLAGLADAVLADPTLSAALAAASGDAQPTGELTGPEALRPFLVAGLARSARPVLVVTAT
TREAEQLVAELGDLLDPTSIAYYPSWETLPHERLSPRSDTVGRRLAVLRRLCHPGTDAAT
GPVQVVVAPVRSMLQPQVKGLGDLIPVELATGDSADIDDVVAGLVGAAYTRVDLVEKRGE
FAVRGGIVDVFPPTEEHPLRVEFFGDDVDEIRTFAVADQRTIEKVERLWAPPCRELLLTD
AVRERAAELGRTHPQLLEITDKLAQGIAVEGMEALIPALVDDLELLVDLMPDDTRVLVLD
PERARARAHDLVATSEEFLAASWATAASGGQAPIDLQAASYHALGDVRTHARERGQSWWT
FSPFGLDDETPSVAQPAPTYRGEVDKAFTDIARWRAEGTRVVVVHVGHGPAQRMVEALAE
RDVPARLVEDLPAGHELDPAVVTITCGNLGHGLLDAERGLAVLTGEDIVGAKASTRDKGA
MPVRRKRQIDPLELKAGDYVVHEQHGVGRFVEMKQREVQGAVREYLVLEYGPSKRGGPAD
RLFVPADTLDQVTRYVGGEQPSLDRLGGGDWTKRKNKARKAVREIAAELIKLYAARQATQ
GHAFGPDSPWQRELEDAFPFHETPDQLTTVDEVKADMERTVPMDRLICGDVGYGKTEIAV
RAAFKAVQDGKQVAVLVPTTLLVNQHLATFSERMSGFPVNLKPLSRFQTDKEAAETVAGL
ADGTVDVVVGTHRLFNAETRFKDLGLIIVDEEQRFGVEHKEAMKRLRTSVDVLSMSATPI
PRTLEMAITGIREMSTITTPPEERHPVLTYVGGYEDRQVVAAVRRELLRDGQVFYIHNRV
SSIEKAAAKIRELVPEARVATAHGQMGEHQLEQVMVDFWEKNFDVLVCTTIVESGIDVSN
ANTMIIERSDTLGLSQLHQLRGRVGRSRERAYAYFLYPTEKPLTETAHERLATLAQHSDL
GGGMAIAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVRDFRDDGGAPEQLEEV
RIELPVEAHLPHDYIPSERLRLEIYKRLAEVRTDADVDEIIAELEDRYGEPPQQVAALLL
VARFRARARKAGIKEITSVGKNVRFHPVVLPESRTIRLNRLYPKSIVKHQLESILVPRPG
IPGRTGTPIEGVALLEWARLVIDSVIDPTE
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctcgccggcctcgccgacgccgtcctcgccgacccgaccctgtccgccgcgctc
gcggcggcctccggggacgcccagccgaccggtgagctcaccggtcccgaggcgctgcgc
ccgttcctggtcgcgggcctggcccgctccgcgcggccggtcctcgtggtcaccgcgacc
acgcgcgaggccgagcagctggtcgccgagctgggcgacctgctcgacccgacgagcatc
gcctactacccgagctgggagacgctgccgcacgagcggctcagcccgcgcagcgacacg
gtcgggcgccggctcgccgtcctgcgccggctctgccacccggggaccgatgccgcgacc
ggaccggtccaggtggtcgtggcgccggtgcgcagcatgctgcagccccaggtcaagggt
ctgggtgacctgatccccgtcgagctggcgaccggcgacagcgccgacatcgacgacgtc
gtcgcggggctcgtgggcgcggcctacacccgggtcgacctggtcgagaagcgcggcgag
ttcgcggtgcgcggtggcatcgtcgacgtcttcccgccgaccgaggagcacccgctgcgc
gtggagttcttcggcgacgacgtcgacgagatccgtacgttcgccgtggccgaccagcgc
accatcgagaaggtcgagcggctctgggcgccgccgtgccgcgagctgctgctgaccgac
gccgtccgcgagcgggccgccgagctcggccggacccacccccagctgctcgagatcacc
gacaagctcgcccagggcatcgcggtcgagggcatggaggcgctcatcccggcgctcgtc
gacgacctcgagctgctcgtcgacctcatgcccgacgacacccgcgtcctcgtgctcgac
cccgagcgggcccgggcccgggcgcacgacctggtcgccacgagcgaggagttcctcgcc
gcgtcctgggcgaccgccgcgagcggtgggcaggcgcccatcgacctgcaggcggcgtcg
taccacgcgctgggcgacgtccgcacccacgcgcgcgagcgcggccagagctggtggacg
ttcagcccgttcggcctcgacgacgagaccccgagcgtcgcgcagcccgcgccgacctac
cgcggcgaggtcgacaaggcgttcaccgacatcgcccggtggcgtgccgagggcacccgc
gtggtcgtcgtccacgtcggccacggaccggcccagcggatggtcgaggcgctcgccgag
cgcgacgtcccggcccggctcgtcgaggacctgccggccggccacgagctcgacccggcg
gtcgtcaccatcacctgcggcaacctgggccacggtctcctcgacgccgagcgcgggctc
gccgtcctcaccggcgaggacatcgtcggcgccaaggcctcgacccgcgacaagggcgcg
atgccggtgcgccgcaagcgccagatcgacccgctcgagctcaaggccggcgactacgtc
gtccacgagcagcacggggtcggccgcttcgtcgagatgaagcagcgcgaggtccagggc
gcggtgcgcgagtacctcgtcctcgagtacggcccctccaagcgcggcggcccggccgac
cggctgttcgtcccggccgacaccctcgaccaggtcacccgctacgtcggtggcgagcag
cccagcctcgaccggctcggcggcggcgactggaccaagcgcaagaacaaggcccgcaag
gccgtccgcgagatcgcggccgagctgatcaagctctacgccgcccgccaggccacccag
ggccacgccttcggccccgacagcccgtggcagcgcgagctcgaggacgccttcccgttc
cacgagacgcccgaccagctgaccacggtcgacgaggtcaaggccgacatggagcgcacc
gtgcccatggaccgcctcatctgcggcgacgtcggctacggcaagaccgagatcgccgtc
cgggcggcgttcaaggcggtccaggacggcaagcaggtcgccgtcctggtgccgacgacg
ctcctggtcaaccagcacctcgcgacgttcagcgagcggatgagcggcttcccggtcaac
ctcaagccgctgagccggttccagaccgacaaggaggccgccgagaccgtcgccggtctc
gccgacggcacggtcgacgtcgtggtcggcacccaccggctcttcaacgccgagacccgg
ttcaaggacctcgggctgatcatcgtcgacgaggagcagcgcttcggtgtcgagcacaag
gaggcgatgaagcggctgcgcacctcggtcgacgtcctctccatgtccgccacgccgatc
ccgcgcacgctcgagatggcgatcaccggcatccgcgagatgtcgaccatcaccaccccg
cccgaggagcggcacccggtgctgacctacgtcggcggctacgaggaccgccaggtcgtc
gccgccgtacgacgcgagctgctccgcgacggtcaggtcttctacatccacaaccgggtg
agctcgatcgagaaggccgcggccaagatccgcgagctggtccccgaggcccgggtcgcc
acggcgcacggccagatgggggagcaccagctcgagcaggtgatggtcgacttctgggag
aagaacttcgacgtcctggtctgcacgaccatcgtcgagtccggcatcgacgtctccaac
gccaacacgatgatcatcgagcgctccgacacgctcggcctctcccagctccaccagctg
cgcggccgggtgggtcgctcgcgcgagcgggcctacgcctacttcctctacccgaccgag
aagccgctcaccgagaccgcccacgagcgcctcgcgacgctcgcccagcactccgacctc
ggcggcggcatggcgatcgcgatgaaggacctcgagatccgcggcgccggcaacctgctc
ggcggcgagcagtccgggcacatcgccgacgtcggcttcgacctctacgtccgcctggtc
ggcgaggcggtgcgcgacttccgcgacgacggcggcgctccggagcagctcgaggaggtc
cgcatcgagctgccggtcgaggcgcacctgccccacgactacatcccgagcgagcggctg
cggctcgagatctacaagcgcctggccgaggtccgtaccgacgccgacgtcgacgagatc
atcgccgagctcgaggaccgctacggcgagccgccccagcaggtcgcggcgctgctgctc
gtggcgcgcttccgggcccgggcccgcaaggccgggatcaaggagatcacctcggtcggc
aagaacgtccgcttccacccggtggtgctgccggagtcgcgcacgatccggctcaaccgg
ctctacccgaagtcgatcgtcaagcaccagctcgagtcgatcctggtgccgcgtccgggc
atcccggggcgtacgggaacccccatcgagggcgtggccctgcttgaatgggcgcggctg
gtgatcgactcggtcatcgaccccacggagtag
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