Nocardioides sp. WV_118_6: ABFU82_02435
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Entry
ABFU82_02435 CDS
T10638
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nocw Nocardioides sp. WV_118_6
Pathway
nocw03420
Nucleotide excision repair
nocw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nocw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABFU82_02435
03430 Mismatch repair
ABFU82_02435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nocw03400
]
ABFU82_02435
Enzymes [BR:
nocw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABFU82_02435
DNA repair and recombination proteins [BR:
nocw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABFU82_02435
MMR (mismatch excision repair)
Other MMR factors
ABFU82_02435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
LptE
Motif
Other DBs
NCBI-ProteinID:
XBB68186
LinkDB
All DBs
Position
522244..525480
Genome browser
AA seq
1078 aa
AA seq
DB search
MTIATPADLQRAMQARFPPSDEQWAAISAPLRPAVVIAGAGSGKTTLMAARVVYLVLTGQ
VRPEEVLGLTFTTKAAAELRQRIRTALRDAGALDLTPAPGAGDDEADEVLEPTVATYNAY
ASGLLTDHGLRIGHEPDTRVITDAARYQLGARAVDRFTGEISLLTDHPETAIQNLLALDS
AMSEHLVGPDDVLGHDAAARRGFERARDEELAGKARKTYVDAIDKAISAIDRRAELLQLV
ASYRGLKRDLGLMDFSDQIELGARLAAERPEVGEIERGRFKVVLLDEYQDTSVAQAIMLS
RLFSAPEPGQGLGHAVTAVGDPNQAIYGWRGASVANILNFAETFPAADGTPTTYALTVNR
RSDLRILDVASHLAEPLYDALETRGAGVARLRAPEGAVDGTVEAHTFETQRDELAWLAAA
VRAAHGGDPGDWAGIGVLTRDNAHAELVFDALTAAGVPVEIVGLSGLLRLPEIAEIVAVL
RLLHDVTDNAALLTLLAGPRWAIGPRDLRLLGQRAGELAGRRGRSADVVTVSEQLVAIAD
GIDPAEVPCLDDALADPGEGDFSTEARERFSLLRDELRLLRVAVGEPLLDLVRRIIDVTG
VDVELASAVSPAAAARRDNLDLFVKAVADFQAVDGDVTLPALLAYLTAEDDQGNGLDIAT
PTEADSVKLLTVHRSKGLEWATVFCVGVCESRFPSAQGRTLWVSSPAVLPAALRGDAADL
PQLEGYDKAALDDYRRRSKAHEADEELRLGYVAFTRAAHRLAVSSFQWGPRKTPYGPSAY
QEAVREVLTSWDLTPEPWLTRPDKGAANPYDAEDPARPWPVDGTGDEARLRLAAAALVGA
TDPDGADPELDIVTAAQVADWDAEIEQLLTEARLASGAGAEVVVPMPGALSATALSRLRD
DPQAFARELVRPMPRPPAPAARFGTRFHAWVEARFGQQGLFDPDELSGRADAGIDDEADL
KELVAAFEDGPFGSRVPYAVEAPFSLVLQGAEGRRQVIRGRIDAVYAEPDGSFLVIDWKT
SARQEADPLQLALYRLAWAELRGLPPERVRAGFYYVRRGELVVHDELAGREEVLALLE
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgacgatcgccacgcctgccgacctccagcgggcgatgcaggcgaggttcccacccagc
gacgagcagtgggcggcgatcagcgcgccgctgcgcccggcggtggtcatcgccggcgcc
gggtccggcaagaccacgctgatggcggcccgggtggtctacctggtgctgaccggccag
gtgcggcccgaggaggtcctcggcctcaccttcaccaccaaggccgcggccgagctgcgc
cagcggatccgcaccgccctgcgcgacgccggcgccctcgacctcacccccgcgcccgga
gcgggcgacgacgaggccgacgaggtcctcgagccgacggtggccacctacaacgcctac
gcctccggcctgctcaccgaccatggtctgcggatcggccacgagcccgacacccgggtg
atcaccgacgccgcccgctaccagctcggcgcccgggcggtcgaccggttcaccggcgag
atctcgctgctgaccgatcaccccgagaccgcgatccagaacctcctcgcgctcgactcc
gcgatgagcgagcacctggtcggccccgacgacgtgctcggccacgacgcggcggcccgg
cgcggcttcgagcgtgcccgcgacgaggagctcgccggcaaggcccgcaagacctacgtc
gacgcgatcgacaaggcgatctccgcgatcgaccgccgggccgagctgctccagctcgtg
gcgtcctaccgggggctcaagcgggacctgggcctgatggacttctccgaccagatcgag
ctcggcgcccggctggcggccgagcggcccgaggtcggcgagatcgagcgcggccggttc
aaggtggtgctgctcgacgagtaccaggacacctcggtcgcccaggcgatcatgctgtcc
cggctgttctccgcgcccgaaccgggccaggggctgggccacgcggtgaccgcggtcggc
gaccccaaccaggcgatctacggctggcgcggggcgtcggtggccaacatcctcaacttc
gccgagaccttcccggcggccgacggcacaccgacgacctacgcgctgaccgtcaaccgg
cgctccgacctgcggatcctcgacgtggccagccacctggccgagccgctctacgacgcg
ctcgagacccgcggcgcgggcgtcgcccggctgcgggcgcccgagggggcggtcgacggc
accgtcgaggcccacacgttcgagacccagcgtgacgagctggcctggctggcggccgcg
gtccgcgcggcccacggcggcgatcccggcgactgggccggcatcggcgtgctgacccgc
gacaacgcccacgccgagctggtcttcgacgcgctgaccgcggccggcgtaccggtcgag
atcgtgggtctctccggcctgctccggctgcccgagatcgccgagatcgtcgcggtgctg
cggctgctccacgacgtcaccgacaacgccgccctgctgaccctgctcgccggaccgcgc
tgggcgatcggcccccgcgacctgcgcctgctcggccagcgggccggcgagctggccggc
cgacgcggacgctcggccgacgtcgtcaccgtctccgagcagctcgtggcgatcgccgac
ggcatcgacccggccgaggtgccgtgcctcgacgacgccctggccgaccccggcgagggc
gacttctccaccgaggcgcgcgagcggttctcgctgctgcgcgacgagctgcggctcctg
cgcgtcgccgtcggcgagccgctgctcgacctggtccggcggatcatcgacgtcaccggc
gtcgacgtcgagctcgcctcggcggtgagcccggccgctgccgcccggcgcgacaacctc
gacctgttcgtcaaggcggtcgccgacttccaggccgtcgacggcgacgtgacgctgccc
gccctcctggcctacctcaccgccgaggacgaccagggcaacggcctcgacatcgccacc
ccgaccgaggccgactcggtcaagctcctcaccgtgcaccgctccaaggggctcgagtgg
gccacggtcttctgcgtcggcgtctgcgagtcgcggttcccgtcggcccaggggcgcacg
ctgtgggtgtcctcgcccgcggtgctgcccgccgcgctgcgcggcgacgcggccgacctg
ccccagctcgagggctacgacaaggccgcgctcgacgactaccggcgccggtccaaggcc
cacgaggccgacgaggagctgcgcctgggctatgtcgccttcacccgcgccgcccaccgg
ctcgccgtgagctcgttccagtggggcccgcgcaagacgccctacggcccctccgcctac
caggaggccgtccgcgaggtgctcacctcctgggacctcacccccgagccgtggctgacc
cggcccgacaagggcgcggccaacccctacgacgccgaggacccggcccggccctggccg
gtcgacggcaccggcgacgaggcccggctgcgactggccgccgcggcgctggtcggcgcc
accgaccccgacggcgccgaccccgagctcgacatcgtcaccgcggcccaggtcgccgac
tgggacgccgagatcgagcagctcctcaccgaggcgcgactggcctcgggcgcgggggcc
gaggtcgtcgtaccgatgccgggggcgttgtcggccaccgccctcagccgcctgcgcgac
gatccccaggcgttcgcccgcgagctggtccgcccgatgccgcgacccccggccccggcc
gcccggttcggtacccgcttccacgcctgggtcgaggcccgcttcggccagcagggcctg
ttcgaccccgacgagctctccggccgggccgacgccgggatcgacgacgaggccgacctc
aaggagctcgtcgccgccttcgaggacggtccgttcggcagccgggtgccctacgccgtc
gaggcgcccttctccctggtcctccagggcgccgagggacgccgccaggtgatccgcggc
cggatcgacgccgtctacgccgagcccgacggctccttcctcgtcatcgactggaagacg
agcgcccgccaggaggccgaccccctccagctcgcgctctaccggctcgcctgggccgag
ctccgggggctgccgcccgagcgggtccgcgccggcttctactacgtacgccgcggcgag
ctcgtcgtgcacgacgagctcgcgggccgcgaggaggtcctggccctcctggagtga
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