Nocardioides sp. WV_118_6: ABFU82_04570
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Entry
ABFU82_04570 CDS
T10638
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nocw Nocardioides sp. WV_118_6
Pathway
nocw03030
DNA replication
nocw03430
Mismatch repair
nocw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nocw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABFU82_04570 (dnaE)
03430 Mismatch repair
ABFU82_04570 (dnaE)
03440 Homologous recombination
ABFU82_04570 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nocw03032
]
ABFU82_04570 (dnaE)
03400 DNA repair and recombination proteins [BR:
nocw03400
]
ABFU82_04570 (dnaE)
Enzymes [BR:
nocw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABFU82_04570 (dnaE)
DNA replication proteins [BR:
nocw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABFU82_04570 (dnaE)
DNA repair and recombination proteins [BR:
nocw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABFU82_04570 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
XBB68594
LinkDB
All DBs
Position
963794..967366
Genome browser
AA seq
1190 aa
AA seq
DB search
MAADAGDFVHLHVHTEYSMLDGASLLDGLFTRVNDLGMSSIAMTDHGNLHGAYDFYSKAN
KYGVKPIIGIEAYITPGTPRGERRRVRWGKANGADGAEEGGNDVAGGGAYTHMTMWAENT
EGMHNLFRLSSRSSLEGYFYKPRMDKEILAEHSKGLIVSTGCPSGAIQTRLRLGQYDEAL
REGSELQDIFGKENVFLELMDHGISIEKRVRDDLIRLGKDLGIPPIATNDSHYNNPDDAD
AHDALICVASGKRLSDPNRLKFDGGGYYIKSAAEMRELWADRFGMPEACDNTVAIAERCN
VEFTESTGGYMARAEVPAGETEESWFRKEVWRGIEARYPGDRLDQEVKDRVEMELAIISQ
KGYCGYYLVVADFIQWSKRNGIRVGPGRGSGAGSIAAYALSITDLCPLEHGLFFERFLNP
ERPSMPDFDIDFDDARRGEVIQYVSDKYGAERVAQIATFGRLKSKAAIKDAARVLDHGFA
IGDKITKAMPPDVMGKGVPLKEIFNADHKRYNDGGEFRALYESDGDVRTIYQTALGLEGQ
IRNWGVHAAGVIMSSEPLIDIVPIMARPQDGAVITQFDYPMCESLGLVKMDFLGLSNLRI
LEDALGNIKANRDEDVVLEELPFDDLATYQLMGRGDTLGVFQLDGGGMRALLRSMQPDKF
ADITAVSALYRPGPMGADSHNKYARRKNGREEIEPIHPALAEALEPVLGETYGLIVYQEQ
VMAIAQVLAGFTLGAADNLRRAMGKKKKEELDKQYAGFQAGMLERGYPQKAIDQLWEILL
PFSDYAFNKSHSAAYGVITYWTAYLKANYPTEYMAALLTSVKDDKDKMAIYLNECRRMKI
QVLPPDVNESAHNFTAVGQDIRFGLTAIRNVGSNVVDGVVETRSTQDRFTDFNDFLSKVP
ASVCNKRVIDSLIKAGAFDDMKHKRRALVAIHETAVDQYVDIKRNEAIGQDSLFAGLGDD
DDGSGGFGVSVAIPDLDEWDKMTLLGHEREMLGLYVSDHPLLGLEHVLSNGTDCTIGQLV
TDEDRPHNSTVTVAGLVTGIQRKITKNGDPWATVTLEDLEGGIDVLLFPSSYRLAAPYLT
EDAIIRVRGQLDTERDTAQLRGQEVTVPDLERSSDGPVVISLPSTRCTGPVVAQLREVLS
THAGLTEVRLQLLSRDSTKLMRLGDNLRVTPSSALFADLKQLLGPGCLAG
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgacgccggggacttcgtccacctgcacgtccacaccgagtactccatgctc
gacggggcgtcgcttctcgacgggctgttcacgcgcgtcaacgacctcggcatgtcgtcg
atcgcgatgaccgaccacggcaacctgcacggcgcctacgacttctactccaaggccaac
aagtacggcgtcaagccgatcatcggcatcgaggcctacatcacccccggtacgccgcgc
ggcgagcgccgccgcgtccgctggggcaaggccaacggcgccgacggtgccgaggagggc
ggcaacgacgtcgccggcggtggcgcctacacccacatgacgatgtgggccgagaacacc
gagggcatgcacaacctgttccggctctcgtcgcgctcgagcctggagggctacttctac
aagccgcggatggacaaggagatcctcgccgagcacagcaagggcctcatcgtctccacc
ggctgccccagcggcgcgatccagacccggctccggctgggccagtacgacgaggcgctg
cgcgagggctccgagctgcaggacatcttcggcaaggagaacgtcttcctcgagctgatg
gaccacggcatctccatcgagaagcgggtccgcgacgacctgatccggctcggcaaggac
ctcgggatcccgccgatcgccaccaacgactcccactacaacaaccccgacgacgccgac
gcccacgacgccctgatctgcgtcgcctccggcaagcgcctctccgaccccaaccggctc
aagttcgacggcggcggctactacatcaagtccgcggccgagatgcgcgagctgtgggcc
gaccggttcggcatgcccgaggcctgcgacaacaccgtcgccatcgccgagcgctgcaac
gtcgagttcaccgagtccaccggcggctacatggcccgggccgaggtgcccgcgggcgag
accgaggagtcctggttccgcaaggaggtctggcgcggcatcgaggcgcgctaccccggc
gaccggctcgaccaggaggtcaaggaccgggtcgagatggagctcgcgatcatctcgcag
aagggctactgcggctactacctcgtggtcgccgacttcatccagtggtccaagcgcaac
ggcatccgggtgggtccggggcgtggctccggtgcgggctcgatcgcggcctacgcgctg
agcatcaccgacctgtgtccgctggagcacggcctgttcttcgagcgcttcctcaacccc
gagcgtccctcgatgcccgacttcgacatcgacttcgacgacgcccgccgtggcgaggtc
atccagtacgtcagcgacaagtacggcgccgagcgcgtcgcccagatcgccaccttcggc
cggctcaagtccaaggccgcgatcaaggacgccgcgcgcgtgctcgaccacggcttcgcg
atcggcgacaagatcaccaaggcgatgccgcccgacgtcatgggcaagggcgtgccgctc
aaggagatcttcaacgccgaccacaagcgctacaacgacggcggcgagttccgcgcgctc
tacgagtccgacggcgacgtccgcacgatctaccagacggcgctgggcctcgagggccag
atccgcaactggggcgtgcacgcggccggcgtgatcatgtccagcgagccgctcatcgac
atcgtgccgatcatggcccgtccccaggacggcgcggtgatcacccagttcgactacccg
atgtgcgagtcgctgggcctggtcaagatggacttcctgggtctgtccaacctgcgcatc
ctcgaggacgccctcggcaacatcaaagccaaccgggacgaggacgtcgtcctcgaggag
ctgcccttcgacgacctggccacctaccagctgatgggtcgcggtgacaccctcggcgtc
ttccagctcgatggtggcggcatgcgggccctgctgcgctcgatgcagcccgacaagttc
gccgacatcaccgccgtctccgcgctctaccgcccgggcccgatgggcgccgactcccac
aacaagtacgcacgccgcaagaacggccgcgaggagatcgagccgatccacccggcgctc
gccgaggcgctcgagccggtgctgggcgagacctacggcctgatcgtctaccaggagcag
gtgatggccatcgcccaggtgctggccggcttcaccctgggtgccgccgacaacctgcgc
cgcgcgatgggcaagaagaagaaggaggagctcgacaagcagtacgccgggttccaggcc
ggcatgctcgagcggggctacccgcagaaggcgatcgaccagctctgggagatcctgctc
ccgttctccgactacgccttcaacaagtcgcactcggccgcctacggcgtcatcacctac
tggacggcgtacctcaaggcgaactacccgaccgagtacatggccgcgctcctcacgtcc
gtcaaggacgacaaggacaagatggccatctacctcaacgagtgccgccggatgaagatc
caggtgctgccgcccgacgtcaacgagtccgcgcacaacttcaccgccgtcggccaggac
atccgcttcggcctcaccgccatccgcaacgtcggctccaacgtggtcgacggcgtggtc
gagacccgcagcacccaggaccggttcaccgacttcaacgacttcctgtccaaggtcccc
gcctcggtgtgcaacaagcgggtcatcgactcgctgatcaaggccggcgccttcgacgac
atgaagcacaagcggcgcgcgctggtggcgatccacgagaccgccgtcgaccagtacgtc
gacatcaagcgcaacgaggcgatcggccaggactcgctcttcgccggtctcggtgacgac
gacgacggcagcggcgggttcggcgtgagcgtggccatccccgacctcgacgagtgggac
aagatgaccctgctcggccacgagcgggagatgctcggcctctacgtctccgaccacccg
ctcctcggcctggagcacgtgctgtccaacggcaccgactgcaccatcggccagctggtc
accgacgaggaccgcccgcacaactccacggtcaccgtggccggcctggtcaccggcatc
cagcgcaagatcaccaagaacggcgacccgtgggccacggtcaccctcgaggacctcgag
ggtggcatcgacgtgctgctgttccccagcagctaccgcctcgccgcgccctacctgacc
gaggatgcgatcatccgggtccgcggccagctcgacaccgagcgcgacaccgcccagctg
cgcggccaggaggtcaccgtcccggacctggagcgcagcagcgacggtccggtcgtgatc
agcctgccctccacgcgctgcaccggtccggtggttgcccagctgcgcgaggtgctcagc
acccacgccgggctgaccgaggtgcgcctgcagctgttgagccgggactccaccaagctc
atgcgcctgggggacaatctccgggtgactccctcctcggcgctgttcgccgatctcaag
cagctcctcggccccgggtgcctggccggatga
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