Nocardioides sp. WV_118_6: ABFU82_06525
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Entry
ABFU82_06525 CDS
T10638
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
nocw Nocardioides sp. WV_118_6
Brite
KEGG Orthology (KO) [BR:
nocw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nocw03019
]
ABFU82_06525
Enzymes [BR:
nocw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ABFU82_06525
Messenger RNA biogenesis [BR:
nocw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ABFU82_06525
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
AAA_22
MTR4_beta-barrel
Motif
Other DBs
NCBI-ProteinID:
XBB68962
LinkDB
All DBs
Position
1360614..1363409
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AA seq
931 aa
AA seq
DB search
MSADEREPAGQSPAERYASYRKDKGHPVFRDFAAGFSFELDDFQVEGCRAVEEGDGVLVA
APTGAGKTVVGEFAVHLALETGRKCFYTTPIKALSNQKYHDLAERYGADQVGLLTGDTSI
NGEAPVVVMTTEVLRNMLYARSRTLVGLGFVVMDEVHYLADRARGAVWEEVIIHLPESVS
VISLSATVSNAEEFGEWLETVRGSTRTIVAERRPVPLFQHVMVGRRLLDLFASSDVDAAA
GFVREGAPVNDELMKLARDDWASTRLKDRRTPKGARGRQGGPGSRNVGSGRRIWIPGRLD
VIDQLERHNLLPAIDFIFSRAGCDAAVKQCLEANLRLTTPEERDEAIEYVERTLGGLPSD
DLHVLGYHDFLDAASRGVAAHHAGMLPAFKECVEELYLRGLVKMVFATETLALGINMPAR
TVVLEKLSKWNGETHADITPGEYTQLTGRAGRRGLDIEGHAVVLWQPGMNPRELAGLAST
RTYPLRSSFRPSYNMAVNLVHSYGRHQARELLEQSFAQFQADRAVVGLARQQRKAEDALE
GYAEAAQCHLGDFLEYAALRRRVSELEKESSKARRHDRRDEAAASLERLTTGDVIIVPVG
KFAGPAVIVEPGLSEHGHRPLVITAERQGRRLAMMDFPTPVEPVAHIRLPKRVDARNPHQ
RKDIAQQVREAVRALPLSVTRPKAERGPVDEAAAREIQALRAQIREHPCHGCAEREDHSR
WAERYAKLQKDTDLLAARIERRTNTVARTFDRVLEVLEALDYLVGDDVTERGRGLMRIYS
DLDLVAAESLRTGLWDDLSPAQLGAVLSALVYEARRPEEGPPNVPGGAIQVTIDAMTRLW
GELERLERDHRLDFLRKPDPGFAWTAYRWAEGQDLDEVITRNDQTAGDFVRQMKQLIDFA
GQIADAAAGTPVRDTARQLVKLLRRGIVASE
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgacgagcgggagccggccggtcagagcccggccgagcgctacgcgtcgtac
cgcaaggacaaggggcacccggtgttccgcgacttcgcggcgggcttctccttcgagctc
gacgacttccaggtcgagggctgtcgcgcggtcgaggagggcgacggcgtgctggtcgcc
gcgccgaccggtgccggcaagacggtggtcggcgagttcgccgtgcacctggcgctcgag
accgggcgcaagtgcttctacaccacgccgatcaaggcgctgtcgaaccagaagtaccac
gacctcgccgagcgctacggcgccgaccaggtcggtctgctcaccggcgacacctcgatc
aacggtgaggcgccggtcgtggtgatgaccaccgaggtgctgcgcaacatgctctacgcg
cgctcccggaccctggtcgggctgggcttcgtcgtgatggacgaggtgcactacctcgcc
gaccgggcccgcggcgcggtctgggaggaggtcatcatccacctccccgagtcggtctcg
gtgatctcgctgtcggcgacggtctccaacgccgaggagttcggcgagtggctcgagacg
gtgcgcggctcgacccgcacgatcgtggccgagcggcgtccggtgccgctgttccagcac
gtcatggtgggacgccggctgctcgacctgttcgcctcctccgacgtcgacgcggcggcc
ggcttcgtccgcgagggcgccccggtcaacgacgagctgatgaagctcgcccgcgacgac
tgggcctcgacccgcctcaaggaccgccgcacgcccaagggcgcgcgcgggcgccagggc
ggccccggcagccgcaacgtcggcagcggacgccggatctggatcccggggcggctcgac
gtgatcgaccagctcgagcggcacaacctgctgcccgcgatcgacttcatcttcagccgc
gccggctgcgacgccgccgtcaagcagtgcctcgaggccaacctgcggctcaccacgccc
gaggagcgcgacgaggcgatcgagtacgtcgagcggaccctcggcggcctgccctccgac
gacctgcacgtgctcggctaccacgacttcctcgacgccgcctcgcgcggcgtcgccgcc
caccacgccggcatgctgccggcgttcaaggagtgcgtcgaggagctctacctgcgcggg
ctggtcaagatggtcttcgccaccgagacgctcgcgctcggcatcaacatgcccgcgcgc
accgtcgtcctggagaagctctcgaagtggaacggcgagacgcacgccgacatcacgccg
ggggagtacacccagctcaccggccgggccgggcgccgcggtctcgacatcgagggccat
gcggtcgtgctctggcagccggggatgaacccgcgcgagctggcgggtctcgcctcgacc
cggacctatccgctgcgctcgtcgttccggccgtcgtacaacatggcggtcaacctggtg
cactcctacgggcggcaccaggcccgcgagctgctggagcagtcgttcgcgcagttccag
gccgaccgcgcggtggtcggcctggcccgccagcagcgcaaggccgaggacgcgctcgag
ggctatgccgaggccgcgcagtgccacctcggcgacttcctggagtacgccgccctgcgc
cgccgggtcagcgagctggagaaggagtccagcaaggcccgccgccacgaccgccgcgac
gaggccgccgcctcgctggagcggctgacgacgggtgacgtgatcatcgtcccggtcggc
aagttcgcgggcccggcggtgatcgtcgagcccggtctgtccgagcacggccaccgcccg
ctggtgatcaccgccgagcgccaggggcgccggctggcgatgatggacttcccgacaccg
gtcgagccggtcgcccacatccggctgcccaagcgggtcgacgcgcgcaacccgcaccag
cgcaaggacatcgcccagcaggtccgcgaggcggtccgggcgctgccgctgtcggtgacc
cggcccaaggccgagcgcgggcccgtcgacgaggccgccgcgcgcgagatccaggcgctg
cgcgcccagatccgcgagcacccgtgccacggctgcgccgagcgcgaggaccactcccgg
tgggccgagcgctacgccaagctgcagaaggacaccgacctgctcgcggcccgcatcgag
cggcggaccaacaccgtggcgcgcaccttcgaccgggtgctcgaggtgctcgaggcgctc
gactacctcgtcggggacgacgtcaccgagcgtggccgcggcctgatgcggatctactcc
gacctcgacctggtcgcggccgagtcgctgcgcacgggcctgtgggacgacctctcaccg
gcccagctcggcgcggtgctctccgccctcgtctacgaggcccgccggcccgaggagggc
ccgccgaacgtcccgggcggcgcgatccaggtgaccatcgacgcgatgacgcggctgtgg
ggcgagctggagcgcctggagcgcgaccaccgcctcgacttcctccgcaagcccgacccg
ggcttcgcctggacggcgtaccgctgggccgagggtcaggacctcgacgaggtgatcacc
cgcaacgaccagaccgccggtgacttcgtgcgccagatgaagcagctcatcgacttcgcc
ggccagatcgccgacgcggcggcggggacgccggtgcgcgacaccgcgcgccagctggtc
aagctcctgcgccgcgggatcgtggcgagcgagtga
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