Nocardioides sp. WV_118_6: ABFU82_13880
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Entry
ABFU82_13880 CDS
T10638
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
nocw Nocardioides sp. WV_118_6
Pathway
nocw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nocw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABFU82_13880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nocw03021
]
ABFU82_13880
03400 DNA repair and recombination proteins [BR:
nocw03400
]
ABFU82_13880
Enzymes [BR:
nocw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABFU82_13880
Transcription machinery [BR:
nocw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABFU82_13880
DNA repair and recombination proteins [BR:
nocw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABFU82_13880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
XBB65205
LinkDB
All DBs
Position
complement(2858892..2859914)
Genome browser
AA seq
340 aa
AA seq
DB search
MLIAQRPTLSEETVDQFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGASVTSIKIDGVL
HEFSTIEGVKEDVTEIILNLKGLVVSSEHDEPVTMYLRKSGAGDVTGADIAPPAGVEVHN
PDLKIATLSDNGKLELELVVERGRGYVSAVQNKGADNEIGRIPVDSIYSPVLKVTYKVEA
TRVEQRTDFDKLVIDVETKPSILPRDAIASAGKTLVELFGLARELNVEAEGIDIGPSPVD
EQLAADLALPVEDLQLTVRSYNCLKREGIHTVGELISRSEQDLLDIRNFGAKSIDEVKAK
LHEMGLSLKDSAPGFDPSAALANYSDDDEDDTAFVEDEQF
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
gtgctcatcgcacagcgccccaccctgtcggaggagaccgtcgaccagttccggtcgcgc
ttcgtcatcgagcccctcgagcccggcttcggctacacgctcggcaactcgctgcgtcgt
accctcctctcctcgatccccggtgcctcggtcacgagcatcaagatcgacggcgtcctc
cacgagttctcgaccatcgagggcgtcaaggaagacgtcacggagatcatcctcaacctc
aagggcctcgtcgtctcctccgagcacgacgagccggtcaccatgtacctgcgcaagtcc
ggtgccggtgacgtcaccggtgccgacatcgcgccgccggccggtgtcgaggtgcacaac
cccgacctgaagatcgccaccctctcggacaacggcaagctcgagctcgagctcgtcgtc
gagcggggccgcggctacgtctcggccgtccagaacaagggcgccgacaacgagatcggc
cggatcccggtcgactcgatctacagcccggtcctcaaggtgacctacaaggtcgaggcc
acccgagtcgagcagcgcaccgacttcgacaagctcgtcatcgacgtcgagaccaagccg
tccatcctgccccgcgacgcgatcgcgtcggccggaaagacgctggtcgagctcttcggc
ctggcccgtgagctcaacgtcgaggccgagggcatcgacatcggcccctcgcccgtcgac
gagcagctcgccgccgacctcgccctcccggtcgaggacctgcagctgaccgtgcggtcg
tacaactgcctcaagcgcgagggcatccacaccgtgggtgagctcatcagccgctcggag
caggacctgctggacatccgcaacttcggtgcgaagtccatcgacgaggtcaaggccaag
ctgcacgagatgggtctgtccctcaaggacagcgccccgggcttcgacccgtcggccgcc
ctggccaactactccgacgacgacgaggacgacaccgccttcgtcgaggacgagcagttc
tga
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