Nocardioides sp. WV_118_6: ABFU82_24670
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Entry
ABFU82_24670 CDS
T10638
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nocw Nocardioides sp. WV_118_6
Brite
KEGG Orthology (KO) [BR:
nocw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nocw03032
]
ABFU82_24670
03400 DNA repair and recombination proteins [BR:
nocw03400
]
ABFU82_24670
Enzymes [BR:
nocw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ABFU82_24670
DNA replication proteins [BR:
nocw03032
]
Prokaryotic type
DNA Topoisomerases
ABFU82_24670
DNA repair and recombination proteins [BR:
nocw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ABFU82_24670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
CUE
Motif
Other DBs
NCBI-ProteinID:
XBB67265
LinkDB
All DBs
Position
5078224..5079177
Genome browser
AA seq
317 aa
AA seq
DB search
MPRLRRTSPEEPGWTRRRAGRGFVYVDAAGDRLPDADVQRCRDLVIPPAWTDVWICPADN
GHLQAVGTDDAGRRQYLYHPAWVARRSAEKHERVVTLGRRLPRIRERVAADLAEDDLGPT
ATCALAVRLIDLGCFRIGNDVYAAENGSFGLTTLERDHVRRRGETLVFAFTGKSGIEHHV
EIDDEVAVAALDRRRRRRRTDRRLLDVGADDVNAYVREVSGLDVTAKDFRTWHATVLAAA
ALAEAPGPDASRTARKRAVAGAMSEVADFLGNTPALARSSYVDPRVVDAYDEGRTIRAAV
RRGGDVERATLRLLAGR
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
gtgccccgcctgcgccgtacgtcgcccgaggaaccgggctggacccggcgccgggccggg
cgcggtttcgtctacgtcgacgccgcgggtgaccggctcccggacgcggacgtccagcgc
tgccgagacctggtgatcccgccggcctggaccgacgtctggatctgtccggccgacaac
gggcacctccaggccgtcggcaccgacgacgccggccgccgccagtacctctaccacccg
gcctgggtggcccgccggtccgcggagaagcacgaacgcgtcgtcacgctgggccggcgc
ctgccgcggatccgggaacgcgtggcggccgacctggccgaggacgacctggggccgacg
gcgacctgtgcgctggcggtccggctgatcgacctgggctgcttccggatcggcaacgac
gtctacgcggccgagaacggctcgttcgggctgaccacgctcgagcgcgaccacgtccgg
cgccgcggcgagacgctcgtcttcgcgttcaccggcaagtccggcatcgagcaccacgtc
gagatcgacgacgaggtcgcggtcgccgcgctcgaccggcggcgccggcgcaggcgcacg
gaccgacggctgctcgacgtgggcgcggacgacgtcaacgcctatgtgcgcgaggtcagc
ggcctcgacgtgacggccaaggacttccggacctggcacgcgaccgtgctggccgccgcc
gcgctcgccgaggctccaggtcccgacgcgagccgcacggcccgcaagcgggcggtggcc
ggggcgatgagcgaggtcgccgacttcctgggcaacaccccggcgctggcgcggtcgtcg
tacgtggacccgcgggtggtggacgcctatgacgaggggcgcacgatccgggccgccgta
cggcgtgggggtgacgtggagcgcgccaccctccggctgctggcgggtcgctga
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integrated database retrieval system
