Nocardioides sp. WV_118_6: ABFU82_27035
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Entry
ABFU82_27035 CDS
T10638
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nocw Nocardioides sp. WV_118_6
Pathway
nocw03420
Nucleotide excision repair
nocw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nocw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABFU82_27035 (pcrA)
03430 Mismatch repair
ABFU82_27035 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nocw03400
]
ABFU82_27035 (pcrA)
Enzymes [BR:
nocw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABFU82_27035 (pcrA)
DNA repair and recombination proteins [BR:
nocw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABFU82_27035 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
ABFU82_27035 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
DEAD
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
XBB67718
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All DBs
Position
5544278..5546710
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AA seq
810 aa
AA seq
DB search
MTTTPPALTADQLLEGLNDPQREAVKHEGVPLLVVAGAGSGKTRVLTRRIAWTIAVRKAH
PGSILAITFTNKAAAEMKERVSELVGNRARLMWVSTFHSACVRILRKEVEHLGYERVKSN
FSIYDAQDQKRLIQLVCSDLELDPRRFQPGPILHWISNHKNELRDPDEVAAEVRNSVDEA
YATAYKAYQRRLREANAFDFDDLIMETVRLFQLKPEIRETYRRRFRHVLVDEYQDTNHAQ
YSLIHQLCGQQLEEHDETTLDGLPADRVPPAELMVVGDADQSIYAFRGADIRNIMDFEKD
FPDARTILLEQNYRSTQTILTAANAVIERNESRKPKRLWSDAGDGDKIVGYVADTEHDEA
RFVSTEIDELTDKGVKPSDVAVFYRTNAQSRVFEEIFIRTGLPYKVVGGVRFYERREIRD
ALAYLRMLVNPDDQVSLRRILNTPKRGIGDRAVLAITMFAERDRLTFWEALQRAGEAPGL
ATRSQTNIEGFVSLVQDLQQMVAAGERPDVILETVLDRSGYLASLEGSDDPQDATRVENL
GELVAVAREFAEDPVAGPSADPADVDAGTVEPGLADFLERVALVADSDQIPDAPEDDPDA
PPDQGVVTLMTLHTAKGLEFPVVFLTGMEDGVFPHSRALGDRPELEEERRLAYVGITRAR
QRLYISRAVVRSAWGAPAHNPGSRFLNELPIDLVDWRRTEADQTRWSRPSYDGYGSGGGD
QGGGQRLGAPTAAGRRNFSSAAARADAAAKSKPSRPIPVLAPGDKVTHDSFGLGTVVSVE
GAAEKSVASIDFGSDGVKRLLLRYAPVEKL
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgactacgacgcctccggccctcaccgcagaccagctcctcgagggcctcaacgaccct
cagcgcgaggcggtgaagcacgagggcgtgcccctgctcgtcgtcgccggcgccggctcg
ggcaagacccgggtgctgacccgccggatcgcgtggaccatcgcggtccgcaaggcccac
ccgggctcgatcctggcgatcaccttcaccaacaaggccgcggccgagatgaaggagcgc
gtctccgagctcgtcggcaaccgcgcccggctgatgtgggtgagcaccttccactcggcg
tgcgtgcggatcctgcgcaaggaggtcgagcacctcggctacgagcgggtgaagtcgaac
ttctccatctacgacgcccaggaccagaagcggctcatccagctcgtctgcagcgacctc
gagctcgacccgcggcgcttccagccgggcccgatcctgcactggatcagcaaccacaag
aacgagctgcgcgatccggacgaggtcgccgccgaggtccgcaactccgtcgacgaggcc
tacgcgacggcgtacaaggcctaccagcggcggctgcgcgaggccaacgccttcgacttc
gacgacctcatcatggagacggtgcggctcttccagctcaagcccgagatccgcgagacc
taccggcgccggttccggcacgtgctggtcgacgagtaccaggacaccaaccacgcgcag
tactccctgatccaccagctctgcggccagcagctcgaggagcacgacgagaccaccctc
gacggcctgcccgccgaccgggtgccgccggccgagctgatggtggtcggtgacgcggac
cagtcgatctacgccttccggggcgccgacatccgcaacatcatggacttcgagaaggac
ttccccgacgcgcgcacgatcctgctggagcagaactaccgctccacccagacgatcctc
accgccgccaacgcggtgatcgagcgcaacgagagccgcaagcccaagcggctgtggtcc
gacgcgggcgacggcgacaagatcgtcggctacgtcgccgacaccgagcacgacgaggcc
cggttcgtctcgaccgagatcgacgagctgaccgacaagggggtcaagccctccgacgtc
gcggtcttctaccggaccaacgcgcagtcgcgcgtgttcgaggagatcttcatccgcacc
gggctgccctacaaggtcgtgggcggcgtgcggttttacgagcgccgcgagatccgcgac
gccctggcgtacctgcggatgctggtcaaccccgacgaccaggtctcgctgcgccgcatc
ctcaacacccccaagcgcggcatcggcgaccgcgcggtcctcgcgatcacgatgttcgcc
gagcgcgaccggctgaccttctgggaggcgctgcagcgcgccggcgaggcccccggcctg
gccacccgcagccagaccaacatcgagggcttcgtcagcctcgtgcaggacctccagcag
atggtcgccgcgggggagcgccccgacgtcatcctggagaccgtcctcgaccgctccggc
tacctcgccagcctcgagggctccgacgacccccaggacgccacccgcgtcgagaacctc
ggcgagctcgtcgccgtggcccgcgagttcgccgaggaccccgtcgccggtccctccgcc
gaccccgccgacgtcgacgccggcaccgtcgagcccggcctggccgacttcctcgagcgg
gtcgccctcgtcgccgactccgaccagatccccgacgcccccgaggacgaccccgacgcc
ccgccggaccagggcgtggtcaccctgatgaccctccacacggccaagggcctggagttc
ccggtcgtcttcctcaccggcatggaggacggcgtctttccccactcccgggccctgggc
gaccgccccgagctcgaggaggagcgccgcctggcgtacgtcggcatcacccgcgcccgc
cagcgcctctacatctcgcgcgccgtcgtccgctccgcctggggcgcgccggcccacaac
cccggctcccgcttcctcaacgagctgcccatcgacctcgtcgactggcgccggaccgag
gccgaccagacccggtggtcgcggccgtcgtacgacgggtacgggtcgggtggcggcgac
cagggcggcggccagcgcctcggcgcccccaccgccgccggccgccgcaacttcagctcg
gcggccgcccgcgccgacgccgccgccaagtccaagccctcgcgccccatccccgtcctc
gcccccggcgacaaggtcacccacgactcattcggcctcggcaccgtggtgtcggtcgag
ggcgccgcggagaagtcggtcgcgtcgatcgacttcgggtcggacggggtgaagcggctg
ctgctgcggtacgcgccggtcgagaagctctag
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