Nocardia otitidiscaviarum: FOH10_00410
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Entry
FOH10_00410 CDS
T06114
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nod
Nocardia otitidiscaviarum
Pathway
nod03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nod00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FOH10_00410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nod03021
]
FOH10_00410
03400 DNA repair and recombination proteins [BR:
nod03400
]
FOH10_00410
Enzymes [BR:
nod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FOH10_00410
Transcription machinery [BR:
nod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FOH10_00410
DNA repair and recombination proteins [BR:
nod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FOH10_00410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QDP77424
UniProt:
A0A516NEU6
LinkDB
All DBs
Position
71804..75757
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD
IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSTKQLIVDEVL
YRELQDRYGEYFTGAMGAEAIQKLMENFDIEAEAENLRETIRTGKGQKKLRALKRLKVVA
AFQANGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVMLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTRLQEGARGEYR
AATKDEPEFGVYSSPAEAQMAVDRGELTVRSLIKVRLTDQRPPKDVEAELFPDGWQRGDA
WITKTTLGRVMFNDLLPADYAFIDEPMPKKRQAAIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMSDVLVPPEKAEIMERYEAQSDQIEKKYQRGALDHQERNNALVKIWQEA
TEEVGQALRAHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIVVPI
AEKLADGTVIRDAHVETSTYARTLAADAIDAKGNVVVEKGHDLGDPALEALLEAGITEVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGSDEVLYDKL
SKRQRLRVFKHEDGTERLLADGDHVEVGQQLLEGSADPHEVLRVMGPRQVQVHLVHEVQE
VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLVERAEFEAANRRVVAEGGEP
ASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARQAAYAVPSYDDTYYTPDGFGTTTGAAVPLDDYGFSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccggatcggcctggccaccgccgaagacatt
cgcaactggtccttcggtgaggtcaagaagccggagaccatcaactaccgcacgctgaag
ccggagaaggacggcctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatttgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgccccg
gtcacccacatctggtacttcaagggtgtgccgtcgcgcctgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtcatcgtcggtgtcgac
gaggaactgcgccacaacgaactctccaccctcgaggcggagatggaggtcgagaagaag
gccgtcgccgatcagcgcgacgccgacctcgaggcgcgggcacagaagctcgaggcggat
atcgccgagctcgaggccgagggcgccaagtccgacgtgcgccgcaaggtcaaggacggc
ggcgagcgcgaaatgcgtcagctgcgcgaccgcgcccagcgggagctggatcgtctcgac
gagatctggaccaccttcaccaagctgtccaccaagcagctcatcgtggacgaggtgctc
taccgcgagctgcaggaccgctacggcgagtacttcaccggtgccatgggtgccgaagcc
atccagaagctgatggagaacttcgacatcgaggccgaggccgagaacctgcgcgagacc
attcgcaccggcaagggccagaagaagctgcgcgccctcaagcgtctgaaggtcgtcgcc
gcgttccaggccaacggcaactcgccgatgggcatggtgctcgacgccgtgccggtgatc
ccgccggagctgcgccccatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgaagcgcctcatcgacctc
ggtgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggagtcggtggacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccggtccgggcaaccgtccgctcaag
tcgctgtcggatctgctcaagggcaagcagggtcgtttccgtcagaacctgctcggcaag
cgtgtcgactactcgggccgttcggtcatcgtggtcggtccgcagctgaagctgcaccag
tgcggtctgcccaagctgatggcgctcgagctgttcaagccgttcgtcatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtccgccaagcggatggtggagcggcagcgg
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtcatgctgaaccgt
gcgcccaccctgcaccgcctgggtattcaggcgttcgagccgctgctggtcgaaggtaag
gccatccagctgcacccgctcgtctgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcggaggcgcaggccgaggcccgcatcctcatgctg
tcctcgaacaacatcctgtcgcccgcctcgggtcgtccgctcgccatgccgcgtctggac
atggtgaccggcctgtactacctgacccgtctgcaggagggtgcgcgcggcgagtaccgc
gcggccaccaaggacgagccggagttcggcgtctactcctcgcccgccgaggcgcagatg
gccgtggaccgcggtgagctgaccgtgcgttcgctgatcaaggtccgcctgaccgatcag
cggccgccgaaggacgtcgaggccgagctgttccccgacggctggcagcggggcgacgcg
tggatcaccaagaccacgctgggccgcgtcatgttcaacgatctgctcccggcggactac
gcgttcatcgacgagccgatgccgaagaagcggcaggccgcgatcatcaacgatctggcc
gagcgctacccgatgatcgtggtggcgcagaccgtcgacaagctcaaggacgcgggcttc
tactgggccacccgctccggtgtcaccgtctccatgtcggacgtgctcgttccgccggag
aaggcggagatcatggagcgctacgaggcgcagtcggatcagatcgagaagaagtaccag
cgtggtgcgctcgatcaccaggagcgcaacaacgccctggtcaagatctggcaggaggcc
accgaagaggtcggtcaggcgctgcgcgcgcactacccggccgacaacccgatcatcacg
atcgtcgactcgggtgcgaccggtaacttcactcagactcgtaccctcgccggtatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcggccgatcaagtcctccttccgt
gagggcctgacggtgctggagtacttcatcaacacccacggtgcgcgaaagggtctggcc
gacaccgcgcttcgcaccgccgactcgggttacctgacccgacgtctggtggacgtgtcg
caggacgtcatcgtgcgcgagaccgactgtggcaccgagcgtggcatcgtcgtcccgatc
gcggagaagctggccgacggcaccgtcattcgtgacgcgcacgtcgaaaccagcacctac
gcacgcactttggccgccgacgcgatcgacgccaagggcaacgtggtggtcgagaagggc
cacgacctgggcgaccccgccctggaggcgctgctcgaggccggtatcaccgaggtgaag
gtccgctccgtgctgacctgcaccaccggcaccggcgtgtgcgcgacctgctacggccgc
tccatggcgaccggcaagctggtcgacatcggtgaggccgtcggtatcgtcgccgcgcag
tccatcggtgagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcgcg
ggtgacgacatcacgggtggtctgccccgcgtgcaggagctcttcgaggctcgtgtgccc
aagggcaaggcccccatcgccgaggtctccggccgcgtgcgcctagaggacgacgaccgc
ttctacaagatcaccatcattccggacgacggttcggacgaggtgctctacgacaagctg
tcgaagcgtcagcgactgcgggtcttcaagcacgaggacggcaccgagcgcctgctcgcc
gacggtgaccacgtggaggtgggccagcagctgctcgagggctcggccgatccgcacgag
gtgctgcgcgtgatgggtccgcgtcaggtgcaggtccacctggtccacgaggtccaggag
gtgtaccgctcgcagggtgtgtccatccatgacaagcacatcgaggtgatcgtccgccag
atgctgcgccgcgtcaccatcatcgattcgggtgcgacggagttcctgcccggttcgctg
gtggagcgcgccgagttcgaggccgccaaccgccgcgtggtcgcggagggtggcgagccc
gcctcgggtcgcccggtgctcatgggtatcaccaaggcgtcgctggccacggattcctgg
ctctcggcggcctccttccaggagaccacccgcgtgctcacggacgccgcgatcaactgc
cgctccgacaagctgatcggcttgaaggagaacgtcatcatcggcaagctgatcccggcc
ggtaccggtatcaaccgctaccgcaacatccaggtccagcccaccgaggaggcccgccag
gccgcgtacgcggtgccgtcctacgacgacacctactacaccccggacggtttcggcacc
accaccggtgccgcggtcccgctggacgactacggtttcagtgactaccggtag
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