Nocardia otitidiscaviarum: FOH10_08245
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Entry
FOH10_08245 CDS
T06114
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
nod
Nocardia otitidiscaviarum
Pathway
nod03030
DNA replication
nod03430
Mismatch repair
nod03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOH10_08245
03430 Mismatch repair
FOH10_08245
03440 Homologous recombination
FOH10_08245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nod03032
]
FOH10_08245
03400 DNA repair and recombination proteins [BR:
nod03400
]
FOH10_08245
Enzymes [BR:
nod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FOH10_08245
DNA replication proteins [BR:
nod03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FOH10_08245
DNA repair and recombination proteins [BR:
nod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FOH10_08245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DEDDh_C
GIY-YIG
RNase_H_2
UVR
DNA_pol_A_exo1
OHCU_decarbox
Motif
Other DBs
NCBI-ProteinID:
QDP83297
UniProt:
A0A516NWL9
LinkDB
All DBs
Position
complement(1934011..1936029)
Genome browser
AA seq
672 aa
AA seq
DB search
MAVPEQLAFDDLDTPLYATTFVVVDLETTGTSPEGDAITEIGAVKVRGGEVLGEFATLVN
PGRSIPPQIVQVTGITTAMVYDAPRIDAVLPGFLEFAAGAVLVAHNARFDLGFLKAAALR
CELAWPAFQVVCTVQLARRILGRDEAPSVKLSVLAQLLGAETTPTHRALDDARATVDVLH
ALIGRVGNLGVHSLTELVDYLPEVTRQQRAKRVLAVDLPTAPGVYLFRGPSDEVLYIGTA
VDLRRRVRGYFTDSETRPRMREMVRLATRVDHVVCAHGLEAGVRELRLLMAHAPPYNRRS
KFPQRAWWLTLTEEPFPRFAVSRTPTRYSLGPFRSRTDAAEVGVTIAEYTGLRTCTVRIP
RDGRHECPPAVVGGCPASARNAPLYIKEYNRAPEAVRALFTGRSDEPLHAIHARIETYSD
AETFESAARLRDRLATVLRALRRTQRLAALARIPELIAARPDGAGGWEFAVIRHARLAAA
GTAARGVPPMPVVDHLVAAAETVIPTRLHDSTPPDTTAPDPTLPPGTPGKTPKPALGTPD
PTPGYTLTTPDRTSGHALTTPDQTAGHAPGTPDPIPGCTLTTPGHTSGYTPPSTPDRMPA
GDILDDGPYPPLRGALPEEAALLARWLEQPGTRIVRTSDGYGEPRLGAGAWTSWLDRADA
AARGEQPIDDPG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
ctggccgtgcccgagcagctcgccttcgacgacctcgacactccgctctacgccacgact
ttcgtggtcgtggacctggagaccaccggaaccagccccgagggcgacgccatcaccgag
atcggcgcggtgaaggtgcgcggtggcgaggtactgggcgagttcgccaccctggtgaac
ccggggcggtcgattccaccgcagatcgtgcaggtcaccggcatcaccacggccatggtc
tacgacgcgccccggatcgacgcggtcctgcccggcttcctggagttcgccgcgggtgcg
gtgctggtggcccacaacgcacgcttcgatctcggtttcctgaaggcggcggcattgcgc
tgtgagctggcctggcccgcgttccaggtggtgtgcacggtacaactggcacggcgcatc
ctgggccgtgacgaggccccctcggtgaagttatcggtactggcgcagctgctgggcgcg
gagacgacgcccacgcaccgcgcactcgacgatgcccgcgccaccgtggacgtactgcac
gcgctcatcggtcgggtcgggaatctgggcgtgcacagcctcaccgaactcgtcgactat
ctgccggaggtcacgcgacagcagcgcgccaaacgcgtgctggcggtggatcttccgacc
gcgcccggggtgtatctgttccgcggtccctccgacgaggtcctctatatagggacggcg
gtcgatctgcgccgccgggtacgcggctacttcaccgattcggagacccgaccgcgcatg
cgggagatggtgcggctggccacccgggtcgaccacgtggtgtgcgcgcacgggctcgag
gccggggtgcgggagctgcggctgctcatggcgcacgcgccgccgtacaaccgccggtcg
aagttcccgcagcgggcgtggtggctcacgctcaccgaggagccgttcccccggttcgcg
gtctcgcggacgccgacgcgatacagcctggggcccttcagatctcggacggacgcagcg
gaggtgggggtgacgatcgccgagtacaccggcctgcgcacctgcaccgtccgcatcccg
cgcgacggccgccatgagtgcccgcccgccgtggtcggcggttgcccggcgagcgcccga
aacgcacccctatatataaaggagtacaaccgcgctcccgaagcggtccgcgcactgttc
accggccgctccgacgaaccactgcacgccattcacgcacgcatcgaaacctattccgac
gcagagactttcgaatccgccgcccgcctccgcgaccgcctggccaccgtcctgcgcgca
ctgcgccgcacccagcgcctggccgccctggcccgcatccccgaactgatcgccgcccgc
cccgacggcgcgggcggctgggagttcgccgtcatccgccacgcccgcctggccgccgcc
ggaaccgcagcccgcggcgtaccccccatgccggtcgtcgaccacctggtcgccgccgcc
gaaaccgtcatccccacccgcctccacgacagcactccccccgacacgaccgcacccgat
ccgacgctgccgcccggcacgcccggcaaaaccccgaaacccgcactcggcacacccgac
ccaaccccgggctacacactcaccacgcccgaccgcacctcgggacacgcactcaccaca
cccgaccagaccgcaggccacgcacccggcacacccgaccccatcccgggctgcacactc
accacgcccggccacacctctggatacacaccacccagcacacccgaccgcatgcccgcg
ggggacatactcgacgacggcccgtatcccccactgcgcggcgcacttccggaggaggcc
gccctcctcgcccgctggctggaacaacctggcacccgcatcgtccgcacctccgacggc
tacggcgaaccccgcctcggcgcaggcgcatggacgagctggctcgaccgtgccgacgcg
gcggcccgcggtgaacagcccatcgacgacccagggtga
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