Nocardia otitidiscaviarum: FOH10_20175
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Entry
FOH10_20175 CDS
T06114
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nod
Nocardia otitidiscaviarum
Pathway
nod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOH10_20175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nod03019
]
FOH10_20175
Messenger RNA biogenesis [BR:
nod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FOH10_20175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QDP83633
UniProt:
A0A516NXL7
LinkDB
All DBs
Position
complement(4523831..4525828)
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AA seq
665 aa
AA seq
DB search
MGRRPRRTASRAAGAPEPVRERDTQQSATPIKETAAPTTETAAPASTSTTTPEPAAAQQE
SRDRSRNESEGGRSGRGRSSDRNRRGGRGRQSGRSDRGEQSAPPVRDPHAFGTPPAAPRG
GLRVFALGGIGEIGRNMTVFEHDGKLLIIDCGVLFPEDQQPGVDLILPDFGPIEDRIDDV
AAVVLTHGHEDHIGAVPFLLRLRRDIPVVGAKFTLALVAAKCREHRLQPKLIEVSEGEHT
QHGPFDCEYFAVNHSIPDALAVAVRTPAGIVLHTGDIKLDQLPLDGRLTDLAGFSRLGDE
GVDLFLVDSTNAEVPGFVTPEREIGPVLDSVIGKARGRVIVASFASHVHRIQQVVDVAQR
YDRRVCFVGRSMVRNMQIAQDLGYLDIPDGLVVDLDQAANLPVHKLVLISTGSQGEPLSA
LSRMARGDHRQINIRADDLVVLASSLIPGNENAVFTVVNGLARLGATVVTQQNAKVHVSG
HASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAVATGVPEERVVLAENGVVVDLVDG
IASITGKVRVGQVYVDGLSVGDVGESTLSDRLVLGEGGFISITVAVDETTGKAVTTPELN
GRGFSDDPDALADAQELVEAELRRLAGEGVTDTHRIAQGVRRVVGRWVADTYRRRPMIVP
TVIGV
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atcggtcgtcgtccacgccgtaccgcgagtcgcgccgcgggagcaccggagccggtgcgg
gagcgcgacacccagcaatcagccacacctatcaaggagaccgccgcgccgacaacggaa
accgccgcaccggcttcgacgtccactacgacgcccgaacccgctgccgcgcaacaggaa
tcacgagatcgcagccgaaacgagtccgagggcggacgttccggccggggccgctcgtcc
gaccgcaaccggcgtggcggccggggccgtcagtcgggccggtccgatcgcggcgagcag
tccgcaccgccggtgcgcgatccgcacgccttcggcaccccgcccgccgccccgcgcggc
ggcctgcgggtgttcgcgctcggcggcatcggcgagatcggtcggaacatgaccgtcttc
gaacatgacggcaaactgctcatcatcgactgcggtgtgctgttcccggaggaccagcag
cccggcgtcgacctgatcctcccggacttcggccccatcgaggaccgcatcgacgatgtc
gcggcggtggtgctgactcacggtcacgaggaccacatcggtgcggtgccgttcctgctg
cgcctgcgtcgcgacatcccggtggtgggcgcgaagttcacgctcgcgctggtggcggcc
aaatgccgcgaacatcggttgcagcccaagctcatcgaggtcagcgagggcgagcacacc
cagcacgggccgttcgactgcgagtacttcgcggtcaaccactccattcccgacgcgctc
gcggtggcggtgcgcacgcccgcgggcatcgtcctgcacaccggcgacatcaaactcgac
cagctgcccctggacggccggctcaccgacctggcgggcttctcgcgactcggcgacgag
ggcgtggatctgttcctggtggactccaccaacgccgaggttcccggcttcgtcaccccc
gaacgcgagatcgggccggtgctcgattcggtgatcggcaaggcgcgcggccgggtcatc
gtggcctccttcgcctcgcacgtgcaccgcatccagcaggtggtggacgtggcgcagcgc
tacgaccgccgggtgtgcttcgtgggccggtccatggtccgcaatatgcagatcgcccag
gatctcggctacctcgacatccccgatggcctggtggtcgatctggatcaggcggcgaat
ctgccggtgcacaagctggtgctcatctccaccggatcgcagggcgagccgctgtcggcg
ctctcgcgcatggcgcgcggcgaccaccggcagatcaatatccgcgccgacgatctggtg
gtgctggcgtcctcgctcattccgggcaacgagaacgccgtcttcaccgtggtgaacggg
ctggcgcggctcggggccaccgtggtgacccagcagaacgcgaaagtccatgtctccggc
cacgcttcggccggtgagctgctgtacctctacaacgcggtgcggcccaccaacgccatg
ccggtgcacggcgaatggcggcatctgcgcgcgaacgcggcactggcggtggccaccggc
gtacccgaggagcgggtggtgctggcggagaacggcgtcgtggtggatctggtggacggt
atcgccagcatcaccggcaaggtgcgggtcggccaggtgtacgtggacggtctatccgtc
ggcgatgtgggcgagtccacgctgtcggaccggctggtgctgggcgagggtggcttcatc
tccatcaccgtcgccgtcgacgagaccaccggaaaggccgtcaccacaccggaactcaac
ggccgcggcttctccgacgatccggacgcgctggccgacgcgcaggaactggtggaggcc
gaactgcgccgcctggcgggcgagggcgtcaccgacacccaccgcatcgcgcagggcgtg
cgccgggtggtgggccgctgggtggccgacacctaccgccgccgcccgatgatcgtcccg
acggtcatcggcgtgtag
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