Nocardia otitidiscaviarum: FOH10_22815
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Entry
FOH10_22815 CDS
T06114
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nod
Nocardia otitidiscaviarum
Pathway
nod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOH10_22815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nod03019
]
FOH10_22815
03400 DNA repair and recombination proteins [BR:
nod03400
]
FOH10_22815
Enzymes [BR:
nod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOH10_22815
Messenger RNA biogenesis [BR:
nod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOH10_22815
DNA repair and recombination proteins [BR:
nod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FOH10_22815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
QDP81130
UniProt:
A0A516NQE6
LinkDB
All DBs
Position
5091831..5093951
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AA seq
706 aa
AA seq
DB search
MERVTPTNATSPTETSAALRDDAERLLRELAGPSARLREDQWTAIEALVVRRQRALVVQR
TGWGKSAVYFIAAKLLRAAGRGPTVIVSPLLALMRNQVAAAERAGVVAATINSGNVTEWD
EIHARVAAGDVDVLLVSPERLNNPDFRDAVLPKLAADAGLVVVDEAHCVSDWGHDFRPDY
RRIRTLIADLGSDVPVLATTATANDRVVTDVATQIGTDTLVLRGSLDRESLRLSVVRIAD
AVERTAWLSQHLRALPGSGIVYTLTVAAAHDLADVLNSHGHQVAAYTGQTEPTEREALEI
ALLNNEVKALIATSALGMGFDKPDLGFVVHVGAPSSPISYYQQVGRAGRGTERAEVVLLP
GPEDRRIWSYFASVAFPREHIVHSVLDSLDRDRPLSTAALEPLVELNRSRLEMVLKVLDV
DGAVKRVRGGWIATGEPWAYDTERYERLAAARDAEQQAMIDYQATAECRMNFLRRQLDDP
GLTPDSPGCGRCDNCTGTRPDTGVDTAQVAEIRARLDRPGIDLAPRKQWPTGMAKLGISL
SGKISDGAETGRVLGRLSDLGWGQRLRALLDAPDGPVPDEVFRACTVVLREWDWARRPTA
VMALESPTHPILAASLAARLAEIGRLRDLGVLHLRPDLPPVSAVNSAHRVAALHNAWETP
DLTSVDGPILLVDTLTDTGWTFTMAARALRAAGADAVLPFALATPS
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcgtgaccccgaccaacgcgacctctccgaccgagaccagtgcggcgctgcgg
gacgacgccgaacggctgctgcgcgaactcgccgggccgtcggcgcggctgcgggaggat
cagtggaccgccatcgaggcgctggtggtgcgacggcagcgggcgctggtggtgcagcgc
accggctggggcaagtcggcggtgtacttcatcgcggccaaactgctgcgggcggcggga
cgcggcccgacggtgatcgtgtctccgctgctggcgctcatgcgcaaccaggtcgcggcc
gccgagcgcgcgggcgtggtggcggccaccatcaactccggcaatgtcaccgaatgggac
gagatccacgcccgggtggccgcgggcgacgtggacgtgctgctggtgagcccggaacgc
ctgaacaatcccgacttccgcgacgcggtgctgccgaaactggccgccgacgccggactg
gtggtcgtcgacgaggcgcactgcgtctccgattggggccacgacttccggccggactac
cggcgcatccgcaccctcatcgccgacctcggctccgatgtgccggtcctggccaccacc
gcgaccgccaacgatcgcgtggtcaccgacgtggccacccagatcggcaccgatacgctg
gtgctgcgcggcagcctcgatcgggaatcgctgcggctgtcggtggtgcgcatcgccgac
gcggtcgagcgcaccgcctggctcagccagcacctgcgcgcactgcccggctccgggatc
gtctacacgctgaccgtcgccgccgcgcacgacctcgccgacgtgctgaattcgcacggc
caccaggtcgccgcctacaccggccagaccgaacccaccgagcgcgaagccctcgagatc
gcgctgttgaacaacgaggtcaaggcgctcatcgccacctcggcactggggatgggcttc
gacaaacccgatctcggattcgtggtgcacgtcggcgcgccctcctcccccatctcctac
taccagcaggtgggccgtgcggggcgcggtaccgagcgcgccgaggtggtgctgctgccc
ggaccggaggaccggcgcatctggagctacttcgcctcggtcgccttccctcgggaacat
atcgtgcactcggtgctggacagtctggaccgggatcggccgctgtccaccgccgcgctg
gaaccgctggtcgaactcaatcgctcgcgcctggagatggtgctcaaggtcctggacgtg
gacggcgcggtcaagcgggtgcgcggcgggtggatcgccaccggcgaaccctgggcctac
gacaccgaacgctatgaacggctcgccgccgcccgcgacgccgaacagcaggccatgatc
gactaccaggccacggccgaatgccggatgaatttcctgcggcggcaactggacgacccg
ggcctcactcccgattcccccggctgcggccgctgcgacaactgcacgggcacccgcccg
gataccggcgtggacaccgcccaggtcgccgagatccgagcccgtctggaccggccgggt
atcgatctggccccgcgcaagcagtggccgacgggtatggccaagctcggaatctccctg
tccggcaagatctccgacggcgccgagaccggccgcgtgctgggccgcctgagcgatctc
ggctggggccagcggctgcgcgccctgctcgacgcaccggacggcccggtgccggacgag
gtcttccgcgcctgcacggtggtactgcgcgaatgggattgggcgcggcgccccaccgcc
gtcatggccctggaatcacccacccacccgattctcgccgcctccctggccgcccggctc
gccgagatcggccgcctgcgcgacctcggcgtcctgcacctgcgcccggacctgcccccg
gtctcggccgtcaactccgcccaccgcgtggccgccctccacaatgcctgggagacaccg
gatctcacctcggtggacggcccgatcctgctggtcgacaccctcaccgacaccggctgg
acgttcaccatggccgcacgcgcgctgcgcgccgccggagccgacgcggtgctgccgttc
gccctggccaccccctcctga
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