Nocardia otitidiscaviarum: FOH10_22860
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Entry
FOH10_22860 CDS
T06114
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nod
Nocardia otitidiscaviarum
Pathway
nod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOH10_22860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nod03019
]
FOH10_22860
03009 Ribosome biogenesis [BR:
nod03009
]
FOH10_22860
Enzymes [BR:
nod01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FOH10_22860
Messenger RNA biogenesis [BR:
nod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FOH10_22860
Ribosome biogenesis [BR:
nod03009
]
Prokaryotic type
rRNA processing factors
FOH10_22860
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QDP83702
UniProt:
A0A516NXS3
LinkDB
All DBs
Position
complement(5101157..5104519)
Genome browser
AA seq
1120 aa
AA seq
DB search
MPERIRVHALAKLLGTTSKRILAHLTEMGAQARSPQSSLDRTVAETVRDAFGPRDVEVTA
ATVPGDAAPGTAAPTSGSVAAEAPAAETTAVAAAAGQAAATVDEAIAAGDDRAADELAAE
EVEQAEAAESTAAHQPTTLFASPFQSVAPAAEESVVFEPPAVVAAPLFLPPDATAAEELR
RKRRVERKPKDEPVEEAAPAAEEPAPAEDSTDEGDWDENRDKNDGASRRRRRGRRGRGRG
RGEQQNEGEDNASESESDTDDEDETRTAADAEASAEGESGDDDAEDSAVPEGASSRRRRR
RRRRKGGEDSDNEPADDDPPNTVVHEREPRNKRRAEKNVDEVQGITGSTRLEAKRQRRRD
GREAGRRRPPILTESEFLARRESVDRVMVVREKHFAEHPTATTQVAVLEDNILVEHFVTS
TGSASMVGNVYLGKVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGRERKIEQAL
KPGDTVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKEIL
RDIVPQDAGVIIRTASEGVSESELARDVERLQKTWRTIEEQAKNGSGAPKTLYEEPDLLV
KVVRDLFNEDFSKLVIEGDRAWTTVENYVRTVAPDMLNRVERHDDNGVDVFGAFRIDEQL
AKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGSNLEETVTRNNLEAAEEIVRQ
MRLRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKKLG
TGLVEAFSTTCEHCHGRGILVHNYPVESAPAEEGGGRREGRRRRKDKGEKAAAAPEPAVV
EEKAPPTEEKAAAKRAHPVALAMAAHQAEDSAHEAADAAAVAVEAVDLAVAQAETTGVDE
AVADTAATSDVTVIEAADQAATAAAQAAAAAEEAAATAAELKAAEVRAAESGTAPTTGES
RAAKARTNGTASTAADAVVAPEAETAAGEAQLMVTEAQAATGAQTAETVTGDVGRPKAVH
PEPKMAVAEPEKVVPAPEKAAPAATTDESPAPAGRRRRRVARTAAAPAADSQGAVFVLSS
ADQPQTPALSLEDTAPPPPPRARTRRRAAGRPAGAPEGGN
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
ttgccggaacggatccgagtgcacgcactggcgaagttgctgggcacgaccagcaaacgc
atccttgcccacctgaccgagatgggcgcgcaagcccgcagcccccaatccagcctggac
cgcaccgtcgccgaaaccgtgcgtgacgcgttcgggccgcgtgacgtggaagtgaccgcc
gcgaccgtgcccggcgacgccgccccgggcaccgccgccccgacctccgggagcgtagcc
gccgaggcgcccgcggccgagaccacggcggtggcggccgcggccggtcaggccgccgcg
accgtcgacgaggccattgccgcgggcgacgaccgggccgccgacgagctggccgccgag
gaggtcgagcaggccgaggccgccgagtcgaccgccgcgcaccagccgaccaccctgttc
gccagcccgttccagtccgtggcgccggccgccgaggaatccgtggtcttcgagcccccc
gccgtggtggccgcaccgctgttcctgccgccggacgccaccgccgccgaggagctgcgc
cgcaagcgccgcgtcgagcgcaagcccaaggacgagccggtcgaggaggccgcgcccgcc
gccgaggagcccgcgcccgccgaggacagcaccgacgagggcgactgggacgagaaccgc
gacaagaacgacggcgcctcccgccgtcgccgccggggccgtcgcggtcgtggccggggt
cgcggcgagcagcagaacgagggcgaggacaacgcctcggagtccgaatcggataccgac
gacgaggacgagacgcggaccgccgccgacgccgaggcgtcggccgagggcgaatccggt
gatgacgacgccgaggattcggccgtgccggagggtgccagctcccgccgtcgccgtcgg
cgccgccgccgcaagggcggggaggacagcgacaacgagcccgccgacgacgatccgccg
aacaccgtcgtgcacgagcgcgaaccgcgcaacaagcggcgcgccgagaagaatgtcgac
gaggtgcagggcatcaccggttccacccggttggaggccaagcgccagcgtcgccgtgac
ggccgcgaggccggtcgccgtcgcccgccgatcctgaccgagtcggagttcctggcgcgg
cgcgagtcggtggaccgcgtgatggtggtgcgggagaagcacttcgccgagcacccgacc
gccaccacccaggtggcggtgctcgaggacaacatcctggtcgaacacttcgtcaccagc
accgggtcggcctccatggtcggcaatgtgtacctgggcaaggtgcagaacgtgctgccc
tcgatggaggcggcgttcgtcgacatcggccgcggccgcaacggcgtgctgtacgcgggc
gaggtgaactgggaggccgccgggctcggtggtcgggagcgcaagatcgagcaggcgctc
aagcccggtgacaccgtgctggtgcaggtctccaaggatccggtgggccacaagggtgcc
cgcctgaccacccagatcagcctggccggtcgcttcctggtgtacgtgcccggcggcacc
tccaccggtatctcgcgcaagctgcccgataccgagcgcaagcggctcaaggagatcctg
cgcgatatcgtgccgcaggacgcgggcgtcatcatccgtaccgcctcggagggcgtgagc
gaatccgagctcgcccgcgacgtggagcggttgcagaagacctggcgcaccatcgaggag
caggccaagaacggctccggcgcgcccaagacgctgtacgaggagcccgacctcctggtc
aaggtcgtgcgcgacctgttcaacgaggacttctccaagctggtcatcgagggcgatcgg
gcctggacgaccgtcgagaactatgtgcgcacggtcgccccggacatgctgaaccgggtc
gagcggcacgacgacaacggtgtggacgtgttcggcgcgttccgcatcgacgagcagctg
gccaaggcgctcgaccgcaaggtgtggctgccctcgggcggcaccctggtgatcgaccgc
accgaggccatgaccgtgatcgacgtgaacaccggcaagttcaccggttccggcggctcc
aatctggaggagacggtcacccgcaacaacctggaggcggccgaggagatcgtgcgccag
atgcggttgcgcgatatcggcggcatgatcgtcgtcgacttcatcgacatggtgctggaa
tccaaccgggatctggtgctgcgccgcctcaccgaggcgctgggtcgtgaccgcacccgc
caccaggtgtccgaggtgacctcgctgggcctggtccagatgacccgcaagaagctgggc
accggcctggtcgaggcgttctccaccacgtgcgagcactgccacgggcgcggcatcctg
gtgcacaactatccggtcgagtccgctccggcggaggagggcgggggccgccgcgagggt
cgccgtcgccgcaaggacaagggcgagaaggccgccgccgcgccggaaccggccgtggtg
gaggagaaggccccgccgaccgaggagaaggccgccgccaagcgggcccacccggtggcg
ctggccatggccgcccaccaggccgaggactcggcgcacgaggccgccgacgccgccgcc
gtcgccgtggaagcggtcgacctggcggtggcgcaggccgagaccaccggagtggacgag
gcggtcgccgataccgcggcgacgtcggacgtgacggtcatcgaggcggccgaccaggcc
gccacggccgccgcgcaggccgccgccgcggccgaggaggccgccgccaccgccgcggag
ctgaaggcggccgaggttcgcgccgccgaatccgggaccgcaccgaccaccggggagtcc
cgcgccgcgaaggcccgcaccaacgggaccgcgtcgaccgccgccgacgcggtggtcgcg
ccggaggccgagacggccgctggtgaggcgcagctgatggtcaccgaggcgcaggccgcc
accggtgcccagaccgcggagacggtgaccggcgatgtcggacgcccgaaggcggtgcac
cccgagccgaagatggccgtggccgagccggagaaggtggtaccggccccggagaaggcg
gctcccgccgcgaccacggacgagtccccggctccggccggtcgccgtcgccgccgggtc
gcgcgcacggccgccgccccggcagccgacagtcagggtgcggtgttcgtgctgtccagc
gcggatcagccgcagaccccggcactgtcgctcgaggacacggcaccgccgccgcctccg
cgcgcccggacccgccgccgtgcggccggtcgcccggccggggccccggagggcggcaat
tag
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