Nocardia otitidiscaviarum: FOH10_27825
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Entry
FOH10_27825 CDS
T06114
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
nod
Nocardia otitidiscaviarum
Pathway
nod03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nod00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FOH10_27825
09124 Replication and repair
03420 Nucleotide excision repair
FOH10_27825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nod03021
]
FOH10_27825
03400 DNA repair and recombination proteins [BR:
nod03400
]
FOH10_27825
Enzymes [BR:
nod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOH10_27825
Transcription machinery [BR:
nod03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
FOH10_27825
DNA repair and recombination proteins [BR:
nod03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
FOH10_27825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
DUF7108
Motif
Other DBs
NCBI-ProteinID:
QDP81978
UniProt:
A0A516NSU9
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All DBs
Position
6217290..6218948
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AA seq
552 aa
AA seq
DB search
MTDGPLIVQSDKTLLLEVDHESADAARQAIAPFAELERAPEHVHTYRITPLALWNARAAG
HDAEQVVDALVTYSRYAVPQPLLVDIVDTMARYGRLQLVKHPAHGLTLVSLDRAVLEEVL
RHKKIAPMLGARLDDDTVIVHSSERGHIKQALLKIGWPAEDLAGYVDGEAHPIDLDFESG
GWHLRDYQEMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQWR
RELLARTSLTEDEIGEYSGERKEIRPVTIATYQVITRKTKGEYRHLELFDSRDWGLVIYD
EVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGWI
APADCVEVRVTLTDAERMAYATAEPEERYKLCSTARTKLAVVESILAQHRDAPSLVIGAY
LDQLEELGEHLNAPVIQGSTRTKEREALFESFRQGEIPVLVVSKVANFSIDLPEASVAVQ
VSGTFGSRQEEAQRLGRLLRPKQDGGQAHFYSVVSRDTLDAEYAAHRQRFLAEQGYAYRI
TDADDLLGPAIG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacggtccattgatcgtgcagagcgacaagacgctgctgctggaggtcgaccac
gagtcggccgacgcggcgcggcaggcgatcgcgccgttcgccgagctcgaacgcgcgccc
gagcatgtgcacacctatcggatcacaccgctggcgctgtggaacgcgcgagcggccgga
cacgacgccgagcaggtggtggacgcgctcgtcacctattcgcggtacgcggtgccgcag
ccgctgctggtggacatcgtcgacaccatggcccgctacggacggctgcaactggtgaag
catccggcgcacgggctcacgctggtgtcgctggatcgcgcggtgctggaagaagtgctg
cggcacaagaagatcgcgcccatgctcggcgcccgcctcgatgacgacaccgtgatcgtg
cactcctccgaacgcggccacatcaagcaggcactgctgaagatcggctggcccgccgag
gatctggccgggtacgtggacggcgaggcgcaccccatcgacctcgacttcgaatccggc
ggctggcacctgcgcgactaccaggagatggccgccgactccttctgggcgggcggttcc
ggcgtggtggtgctgccctgcggtgcgggcaagaccatggtgggcgcggcggccatggcc
aaggccaaggcgaccaccctgatcctggtcaccaataccgtggccgggcgacagtggcgg
cgcgaactgctggcccgcacctcgctcaccgaggacgagatcggcgagtactccggcgag
cgcaaggagatccgcccggtcaccatcgccacctatcaggtgatcacccgcaagaccaag
ggcgagtaccggcacctcgaactcttcgacagccgggactggggcctggtgatctacgac
gaggtgcacctgctgcccgcgcccgtcttccgcatgaccgccgatctgcagtcgcggcga
cgactgggcctgacggcgaccctggtgcgcgaggacggccgcgagggcgacgtcttctcc
ctcatcggccccaagcgctacgacgcgccgtggaaggacatcgaggcgcagggctggatc
gcccccgccgactgcgtcgaggtgcgggtgacgctcaccgacgccgagcgcatggcctac
gccaccgccgaacccgaggagcgctacaagctgtgctccaccgcccgcaccaaactcgcc
gtggtggaatcgattctggcgcagcatcgcgacgcgccgagcctggtcatcggggcctat
ctggatcagctcgaggaactgggcgaacatctgaacgcacccgtgatccagggctccacc
cgcaccaaggagcgggaggccctgttcgagtcgttccggcagggcgagatcccggtgctg
gtggtctcgaaggtcgccaatttctccatcgacctcccggaagcgtcggtggcggtgcag
gtttcgggcaccttcggctcacggcaggaggaggcgcaacggctgggccgcctgctgcga
ccgaaacaggacggcggccaggcgcacttctactccgtggtctcccgggacaccctggac
gccgaatacgcggcgcaccgacagcgtttcctggccgagcaagggtacgcctatcgcatc
acggatgcggacgacctactgggtccggcgataggataa
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