Nocardia otitidiscaviarum: FOH10_29560
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Entry
FOH10_29560 CDS
T06114
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nod
Nocardia otitidiscaviarum
Brite
KEGG Orthology (KO) [BR:
nod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nod03032
]
FOH10_29560 (topA)
03400 DNA repair and recombination proteins [BR:
nod03400
]
FOH10_29560 (topA)
Enzymes [BR:
nod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FOH10_29560 (topA)
DNA replication proteins [BR:
nod03032
]
Prokaryotic type
DNA Topoisomerases
FOH10_29560 (topA)
DNA repair and recombination proteins [BR:
nod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FOH10_29560 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QDP83859
UniProt:
A0A516NY94
LinkDB
All DBs
Position
complement(6569488..6572361)
Genome browser
AA seq
957 aa
AA seq
DB search
MRRLVIVESPTKARKIAPYLGRNYVVEASVGHIRDLPRGAADVPAKYKGQDWARLGVDVN
NDFEPIYVISPDKKAKVSELKSLLADADELYLATDPDREGEAIAWHLLETLKPKVPVRRM
VFHEITEPAIRAAAADTRDLDQDLVDAQETRRILDRLYGYEVSPVLWKKVMPKLSAGRVQ
SVATRVIVQRERERMAFRSAEYWDIAAKLDAGGESEAGNPRVFGARLVNVDGARVASGRD
FGPDGLLKTASGVVVLDADHARRLAEGLQGVDLAVTSVESKPYTRKPYAPFMTSTLQQEA
ARKLRFGSERTMRVAQRLYENGYITYMRTDSTTLSESAIQAARAQATQLYGAEFVSPTPR
QYNRKVKNAQEAHEAIRPSGDTFATPGQLHSRLDNDEFRLYELIWQRTVASQMADARGTT
LTVRITGVANTGEECVFSASGRTITFPGFLKAYVESVDEEAGGQSDDAESRLPALSEGQG
VTAVELNPDGHTTNPPPRFTEASLIKALEELGIGRPSTYSSIIKTILDRGYVYKRGSALV
PSWVAFAVVGLLEAYFGRLVDFDFTAAMEDDLDAIAGGREQRGNWLSSFYFGGDHGVEGS
VARSGGLKKMVGEQLDDIDARLINSIKLFSDAEGRDVVVRVGRYGPYLERMVANPDDPQG
DPVSQRANLPDELPPDELTPEVAEKLFATPQEGRRLGKDPETGHEIVAKEGRFGPYVTEI
LPEPEADIDTGGKKPAKKAAAPKPRTGSLFKSMDLSTITLDDALKLLSLPRVVGVDPASG
EEITAQNGRYGPYLKKGTDSRSLAGEEQIFTVTLEEALKIYAEPKRRGGQAASAAPLREL
GVDPASQKPMVIKDGRFGPYVTDGETNASLRKGDEVESITDERASELLADRRARGPVKKA
AKKSAKKAAAKKTTAKKTTAKKAAGTTGEGAAAKKTAAKKTAAKKAPAKKATAATKS
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
ctgcgtcgtctcgtgatcgtcgagtcgccgacgaaggcccgcaagatcgccccctacctc
ggtcgcaactatgtcgtggaggcgtcggtcggtcacattcgggacctgccgcgcggcgcg
gcggatgtgcccgccaaatacaaaggacaggactgggcgcgcctgggcgtcgacgtcaac
aacgacttcgagcccatctatgtgatcagcccggataagaaggccaaggtcagcgagctc
aagagcctgctcgccgacgccgacgagctctacctcgccaccgaccccgaccgcgagggc
gaggccatcgcgtggcatctgctggaaaccctcaagccgaaggttccggtccggcgcatg
gtgttccacgagatcaccgagcccgccattcgcgcggccgccgccgacacccgggatctg
gaccaggatctggtcgacgcgcaggagacgcggcgcatcctggaccgtctctacggctac
gaggtcagccccgtgctgtggaagaaggtcatgccgaaactgtcggcgggccgggtgcag
tcggtggcgacccgcgtgatcgtgcagcgcgagcgggagcgcatggcgttccgttccgcg
gagtactgggacatcgccgccaagctggacgccggcggcgagagcgaggccgggaacccc
cgggtgttcggcgcgcggctggtgaacgtggacggggcgcgggtggcgtccggtcgcgac
ttcgggccggacggtctgctcaagaccgcctccggtgtggtcgtgctcgacgccgatcac
gcgcggcgcctggccgaggggctgcagggggtggacctggcggtcacctccgtcgaatcc
aagccctacacgcgcaagccctacgcgccgttcatgacctcgaccctgcagcaggaggcg
gcgcgcaagctgcgcttcggctccgagcgcaccatgcgggtggcgcagcggctgtacgag
aacggctacatcacctacatgcgtaccgactcgacgaccttgtcggagtcggcgattcag
gcggcgcgggcgcaggccacgcagttgtacggtgcggaattcgtgagtcctactccgcgc
cagtacaaccggaaggtcaagaacgcgcaggaggcgcacgaggccatccgcccgtcgggc
gacaccttcgccacgccggggcagctgcattcgcggctcgacaatgacgaattccgtttg
tacgaactgatttggcagcggaccgtggcctcgcagatggcggacgcacgcggtaccacg
ctgacggtccgcatcaccggtgtcgcgaataccggtgaggaatgcgtgttttcggcgtcg
ggccgcaccatcaccttcccgggcttcctgaaggcgtatgtcgagagtgtcgacgaggag
gcgggcggtcagtccgacgacgccgaatcgcggttgcccgcgctgtccgaggggcagggc
gtcacggccgtggagctcaaccccgacgggcacaccaccaatccgccgccgcgattcacc
gaagcctcgctgatcaaggcgctcgaagagctcggcatcggtcgcccgtcgacctattcg
tcgatcatcaagaccattctcgatcgcgggtacgtgtacaagcgcggcagtgcgctggtg
ccgtcctgggtggcgttcgcggtggtcggcctgctggaggcgtacttcggccgtctggtc
gacttcgacttcaccgcggccatggaggacgatctcgacgccatcgcaggcgggcgggag
cagcgcggaaactggttgtccagcttctatttcggcggcgatcacggtgtcgagggttcg
gtcgcgcgcagtggcgggctcaagaagatggtgggcgagcagctcgacgacatcgacgcg
cgactgatcaactccatcaagctgttcagcgatgccgagggccgcgacgtggtggtccgg
gtcggccggtacgggccgtatctggagcgcatggtcgccaatcctgatgacccgcaaggg
gatccggtctcgcagcgggcgaatctgcccgacgagctgccgccggacgagctgaccccc
gaggtcgcggagaagctgttcgccactccgcaggagggccgccgcctcggcaaggatccg
gagaccggacacgaaatcgtcgccaaggaaggacgtttcgggccgtacgtcaccgagatc
ctgccggagcccgaggccgatatcgacaccggcggcaagaaacccgccaagaaggcggcc
gcgccgaagccgcgcaccgggtcgctgttcaagtcgatggatctgagcaccatcaccctc
gacgacgcgctcaagctgctgtcgctgccgcgggtggtgggcgtcgatccggcttccggc
gaggagatcaccgcgcagaacggacgttacgggccgtacctgaagaagggcacggattcg
cggtcgctggcgggggaggagcagatcttcaccgtgacgctggaggaggcgctgaagatc
tacgccgagcccaagcggcgcggcgggcaggcggcgagtgcggcaccgctgcgtgagctg
ggtgtcgatccggcgtcgcagaagcccatggtgatcaaggacggtcggttcggaccgtat
gtcaccgacggcgagaccaatgccagtctgcgcaagggcgacgaggtcgagtccatcacc
gatgagcgcgcctccgaactgctcgcggatcggcgggcgcgcgggccggtgaagaaggcc
gcgaagaagtcggccaagaaggccgcggcgaagaagaccaccgccaagaagaccacagcg
aagaaggccgcgggcacgacgggcgagggcgcggcggccaagaagacggccgcgaagaag
accgccgccaagaaggctccggcgaagaaggcgacggctgccacgaagtcctga
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