Nocardioides sp. TF02-7: MF408_06210
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Entry
MF408_06210 CDS
T10483
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nof Nocardioides sp. TF02-7
Brite
KEGG Orthology (KO) [BR:
nof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nof03032
]
MF408_06210
03400 DNA repair and recombination proteins [BR:
nof03400
]
MF408_06210
Enzymes [BR:
nof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MF408_06210
DNA replication proteins [BR:
nof03032
]
Prokaryotic type
DNA Topoisomerases
MF408_06210
DNA repair and recombination proteins [BR:
nof03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MF408_06210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Motif
Other DBs
NCBI-ProteinID:
UMG93750
LinkDB
All DBs
Position
complement(1216429..1217238)
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AA seq
269 aa
AA seq
DB search
MGTDDAGRRQYIYHPVWVEKRAAEKYDRVLRFGKRLPQVRERVLGDLREEGLSVEHACAL
AVRLLDVGYFRIGNDVYAEENGSFGLTTLERQHVRRRGGSLVFEFTGKSGIEHRIEIEDP
LIVETLERMRRRRSTDPSLLVFRNGRGWGSLTPTHVNGYLREVSGMDATAKDFRTWHATV
IAAAALAQAPGPEATKTARKRAVTAVMRQVADYLGNTPALARSAYVDPRVVDAYEEGRTI
RAATRRTFDDPDARQAALERATLRLVLSR
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
gtgggcaccgacgacgccggccggcggcagtacatctaccacccggtgtgggtggagaag
cgggcggcggagaagtacgaccgggtgctgcggttcggcaagcgcctcccgcaggtcagg
gagcgggtcctcggcgacctgcgcgaggaggggttgtcggtcgagcacgcctgtgcgctg
gcggtgcgactgctcgacgtcggctacttccggatcggcaacgacgtctacgccgaggag
aacgggtcgttcgggctgaccacgctcgagcggcagcacgtgcgccggcgcggcggctcg
ctcgtcttcgagttcaccggcaagtccggcatcgagcaccggatcgagatcgaggacccg
ctcatcgtcgagaccctcgagcggatgcgccgccgccgcagcaccgacccgtcgctgctc
gtcttccgcaacggccgcggctggggctcgctcactcccacccacgtcaacggctacctc
cgcgaggtcagcggcatggacgccaccgccaaggacttccgcacctggcacgccaccgtg
atcgccgccgccgccctcgcgcaggcacccggccccgaggccaccaagaccgcgcgcaag
cgcgccgtcaccgcggtgatgcgccaggtggccgactacctcggcaacaccccggcgctc
gcccggtcggcgtacgtcgacccgcgggtggtcgacgcctacgaggagggccgcacgatc
cgcgccgccacccggcggaccttcgacgaccccgacgcccggcaggccgcactggagcgg
gcgacccttcggctggtcctctccaggtga
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