Nocardioides sp. TF02-7: MF408_09950
Help
Entry
MF408_09950 CDS
T10483
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nof Nocardioides sp. TF02-7
Pathway
nof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MF408_09950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nof03019
]
MF408_09950
03009 Ribosome biogenesis [BR:
nof03009
]
MF408_09950
Enzymes [BR:
nof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MF408_09950
Messenger RNA biogenesis [BR:
nof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MF408_09950
Ribosome biogenesis [BR:
nof03009
]
Prokaryotic type
rRNA helicases
MF408_09950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UMG94299
LinkDB
All DBs
Position
1943859..1945589
Genome browser
AA seq
576 aa
AA seq
DB search
MSDAAPDPSTADDVTSDDTPSAPGFAELGLGAKVLKSLADVGYESPSAIQAQTIPHLLAG
RDVMGLAQTGTGKTAAFALPILDRLDPGQKTPQALVLAPTRELALQVCEAFEKYAAHTRG
VHVLPVYGGQGYGVQLSALRRGVHVVVGTPGRIMDHLDKGTLDLSELRFLVLDEADEMLN
MGFAEDVETILADTPEDKQVALFSATMPRQIRALSAKYLKDPVEVTIERKTRTAENIAQR
YLIVSYPQKVDALTRILEVENFEGMIVFVRTKNETETLAEKLRARGFAAAAINGDVPQAV
RERTVNQLKDGKLDILVATDVAARGLDVERITHVVNYDIPTDTESYVHRIGRTGRAGRSG
DAISFVTPRERYLLKHIEKATRQPLTQMQLPSVEDVNETRLARFDDRITEALSSPQVGFF
RDVVSHYVREHDVPELDVAAALAQVLHGDTPLLLEEEPEPVRPPRRDRDDRPRRDGERGE
RRGRRGSDQPMASYKIQVGKRHRVEPRQIVGAIANEGGLGRNDFGAITIRGDYSIVELPA
KLPQHVWEKLKETRISGKLIELQRDYGPPKRKKPAK
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgacgctgcacccgacccctccaccgctgacgacgtgacctccgacgacaccccg
tccgcccccggcttcgccgagctcggcctcggcgcgaaggtgctgaagtccctcgccgac
gtcggctacgagtcgccgtcggcgatccaggcgcagacgatcccgcacctgctggcgggt
cgcgacgtgatgggtctcgcccagaccggcaccggcaagacggcggcgttcgcgctgccg
atcctcgaccgcctcgaccccgggcagaagacgccgcaggcgctggtgctggcgccgacc
cgcgagctggccctgcaggtgtgcgaggcgttcgagaagtacgccgcccacacccgcggc
gtccacgtgctgccggtctacggcggccagggctacggcgtgcagctgtcggcgctgcgg
cgcggcgtccacgtcgtggtcggcacgccggggcggatcatggaccacctcgacaagggc
acgctcgacctctccgagctgcggttcctcgtgctcgacgaggcggacgagatgctcaac
atgggcttcgcggaggacgtggagacgatcctcgccgacaccccggaggacaagcaggtc
gcgctgttctccgccacgatgccgcggcagatccgcgcgctctcggcgaagtacctcaag
gacccggtcgaggtcaccatcgagcggaagacccgcaccgccgagaacatcgcccagcgc
tacctgatcgtcagctacccgcagaaggtcgacgcgctcacccggatcctcgaggtcgag
aacttcgaggggatgatcgtcttcgtccgcaccaagaacgagaccgagacgctcgcggag
aagctgcgcgcccgcgggttcgcggccgccgccatcaacggcgacgtgccgcaggcggtg
cgcgagcgcacggtcaaccagctcaaggacggcaagctcgacatcctcgtcgccaccgac
gtcgccgcgcgcggcctcgacgtcgagcggatcacccacgtcgtcaactacgacatcccc
accgacaccgagtcctacgtccaccggatcggccgcaccggccgggccgggcgcagcggc
gacgcgatctcgttcgtcacgccccgcgagcggtacctgctcaagcacatcgagaaggcc
acccggcagccgctgacgcagatgcagctgccgagcgtcgaggacgtcaacgagacccgg
ctggcgcgcttcgacgaccggatcaccgaggcgctctcgtcgccgcaggtcgggttcttc
cgtgacgtggtcagccactacgtccgcgagcacgacgtgcccgagctcgacgtggcggcg
gcgctggcccaggtgctccacggcgacaccccgctgctgctggaggaggagccggagccg
gtgcgcccgccgcgccgcgaccgcgacgaccgcccccgccgcgacggcgagcggggcgag
cggcgcgggcgccgcgggtccgaccagccgatggcgtcgtacaagatccaggtcggcaag
cgccaccgcgtcgagccgcggcagatcgtcggcgcgatcgccaacgagggcggcctcggc
cgcaacgacttcggggcgatcaccatccgtggcgactactcgatcgtcgagctgcccgcc
aagctgccccagcacgtgtgggagaagctgaaggagacccggatcagcggcaagctcatc
gagctccagcgcgactacgggccgccgaagcgcaagaagcccgcgaagtag
DBGET
integrated database retrieval system
