Nocardioides sp. TF02-7: MF408_10350
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Entry
MF408_10350 CDS
T10483
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
nof Nocardioides sp. TF02-7
Pathway
nof03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MF408_10350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nof03400
]
MF408_10350
Enzymes [BR:
nof01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
MF408_10350
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
MF408_10350
DNA repair and recombination proteins [BR:
nof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MF408_10350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
NFACT_N
p47_phox_C
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
UMG94359
LinkDB
All DBs
Position
complement(2021338..2022216)
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AA seq
292 aa
AA seq
DB search
MPELPEVEALALDLRGRLAGRAITKVHVAAFSALKTYDPPLAAIEGALVDDVRRHGKFLD
IEASGLHLVLHLARAGWVRWKDEVPALPPRPSSKSTLAVRVVLDEQDGLTPGLDVTEAGT
KKSLALYLVRSPADVEGIARLGPDPLDDGFTQDSLAQILQVEGRKQIKGVLRHQGTIAGI
GNAYSDEILHAARMSPFKPANSLTDDELTTLFRAIKDTVGDAVERSRGLAASELKAEKKS
HLAVHGRTGQPCPVCGDTVREVSFADSSLQYCPTCQTGGKPLADRRLSKLLK
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagctgcccgaggtcgaggcgctggccctggacctgcggggccggctggccggc
cgcgccatcaccaaggtccacgtggcggcgttcagcgcgctcaagacctacgacccgccg
ctggcggcgatcgagggcgccctcgtcgacgacgtccggcgccacggcaagttcctcgac
atcgaggcctccggcctccacctggtgctgcacctcgcccgggccggctgggtgcgctgg
aaggacgaggtgccggccctgccaccccggccgagctcgaagtccaccctcgccgtgcgg
gtcgtgctcgacgagcaggacggcctcacgcccggtctcgacgtcaccgaggccggcacc
aagaagtcgctcgccctctacctcgtccgctcccccgccgacgtcgagggcatcgcccgg
ctggggcccgacccgctcgacgacgggttcacccaggactccctggcccagatcctgcag
gtcgagggccgcaagcagatcaagggcgtgctgcgccaccagggcaccatcgccggcatc
ggcaacgcctactccgacgagatcctgcacgccgcgcggatgagccccttcaagccggcc
aacagcctcaccgacgacgagctcaccacgctgttccgcgcgatcaaggacaccgtcggc
gacgccgtcgaacgctcccgcggcctggccgccagcgagctcaaggcggagaagaagtca
cacctcgccgtccacggccgcaccggccagccgtgcccggtctgcggcgacaccgtccgc
gaggtgtcgttcgccgactccagcctgcagtactgcccgacctgccagaccggcggcaag
ccgctcgccgaccgccggctgagcaagctcctcaagtga
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