Novosphingobium sp. Gsoil 351: GKE62_00170
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Entry
GKE62_00170 CDS
T06443
Name
(GenBank) pyridoxal-dependent decarboxylase, exosortase A system-associated
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
nog
Novosphingobium sp. Gsoil 351
Pathway
nog00300
Lysine biosynthesis
nog00470
D-Amino acid metabolism
nog01100
Metabolic pathways
nog01110
Biosynthesis of secondary metabolites
nog01120
Microbial metabolism in diverse environments
nog01230
Biosynthesis of amino acids
Module
nog_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
nog00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
GKE62_00170
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
GKE62_00170
Enzymes [BR:
nog01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
GKE62_00170
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Paralog
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Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
NAD_binding_11
Motif
Other DBs
NCBI-ProteinID:
QGN53204
LinkDB
All DBs
Position
35906..37132
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AA seq
408 aa
AA seq
DB search
MRPLGPIPDGFAAIDGELAIDGRTAGSLVAEAGDTPLFVYSRTLVGERVARLRRAMPGRL
AIHYAVKANPYGSLLEFMSGQVDGFDIASAGELAIVAAAGIDPARVSFAGPGKRDAELAA
AITAGITINLESLAETHRALAIGERLGEPPRLAARVNPDFDLKGSGMKMGGGAKPFGVDA
EKVPEVIRTVLASGAEWRGLHIFAGSQALDAAAIIETQAQALALAARLAEQVGAPLPACN
LGGGFGIPYFPGDTDLDVESIGAALEDEFSSLPQVLVDTDFCIELGRWLVGPAGVYLTRI
VDRKQSHGEVFLVTDGGLHHQLAASGNFGTVVRRNYPVAIASRFGAPVEEEASVVGCLCT
PLDRLADKAGFPRAEVGDLVAVFCAGAYGATASPAQFLGQGPAREMLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgcttggcccgattcccgacggcttcgcggcgatcgacggcgagctggcgatc
gacggacgcaccgccggatcgttggtcgccgaggccggcgacaccccgctgttcgtctat
tcgcgtacgttggtgggggagcgggtggcccggttgcgacgcgcgatgcccggacggttg
gcgatccattatgcggtcaaagcaaatccctacggctcacttctcgaattcatgtcaggt
caagtcgatggcttcgacatcgcctcggcgggcgagttggcgatcgtcgcggcggccggg
atcgacccggcgagagtcagtttcgcggggccgggcaaacgcgacgcggagctcgcggcg
gcgatcacggccgggatcaccatcaacctcgaatcgctcgccgagacgcatcgcgcgctg
gcgatcggcgagcgcctcggcgagccgccgcggctggcggcgcgggtcaacccggacttc
gacctgaaagggtcgggcatgaagatgggcggcggcgccaaaccgttcggggttgacgcg
gagaaagtgccggaagtgatccggaccgtgcttgcttcaggcgcggagtggcggggcttg
cacatctttgcgggcagtcaggcgctcgacgccgccgcgatcatcgagacccaggcgcag
gccctggccttggctgcgcggttggctgagcaagtgggcgccccgctgccagcctgcaat
ctgggcggggggttcggcattccctacttcccgggcgataccgatctcgatgtcgagagc
atcggggcggcgctggaggatgaattttcgtcgctgccgcaagtcctcgtggacactgat
ttctgcatcgaactgggtcgctggctggtcgggccggccggggtctatctgacccggatc
gtcgaccgcaagcaaagccacggcgaggtgtttctcgtcaccgacggcgggctgcaccac
cagctcgccgccagcgggaacttcggcacggtggtccgccgcaactatcccgtcgccatc
gccagccggttcggcgcgccggtcgaagaagaggccagcgtcgtcggatgcctgtgcacc
ccactcgaccgtctggccgacaaggccggcttcccgcgcgccgaagtcggcgatctggtc
gcggtgttctgtgctggggcctacggcgcgacggccagcccggcgcagttcctgggacag
gggccggcacgagaaatgctgatctga
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