Novosphingobium sp. Gsoil 351: GKE62_06870
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Entry
GKE62_06870 CDS
T06443
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
nog
Novosphingobium sp. Gsoil 351
Pathway
nog03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nog00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GKE62_06870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nog03021
]
GKE62_06870
03400 DNA repair and recombination proteins [BR:
nog03400
]
GKE62_06870
Enzymes [BR:
nog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GKE62_06870
Transcription machinery [BR:
nog03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GKE62_06870
DNA repair and recombination proteins [BR:
nog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GKE62_06870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
RNA_pol_L_2
HHH_XRCC3_RpoA
IDH
Motif
Other DBs
NCBI-ProteinID:
QGN54316
LinkDB
All DBs
Position
complement(1444371..1445432)
Genome browser
AA seq
353 aa
AA seq
DB search
MTVNIKNWQELKKPNNLEVKTGSDKRRATFVAEPLERGFGLTLGNALRRVLLSSLQGASI
TSIKIENVLHEFSSLAGVREDVTDIVLNVKQIAIRMQGEGPKRLQLAVTGPAEVKAGDIA
VSGDIEIMNKDLVICHLDEGATLNMELTADTGKGYVPAVGNRPVDAPIGLIPVDSLYSPV
RQVSYKVDNARVGQELDFDKLSLTIETDGTVTPEDAVAYAARILQDQLALFVHFDDSMPS
GTHVPSMAGLPAHTADESDTNQLNRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTE
AEMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaacatcaagaactggcaggaactcaagaagcccaacaacctcgaggtcaag
accggttcggacaagcgccgcgcgaccttcgtcgccgagccgctcgagcgcgggtttggc
ctgaccctgggcaacgcgctgcgccgcgtgctgctctcgagcctgcagggcgcctcgatc
acctcgatcaagatcgagaacgtgctccacgagttctcgtcgctggccggcgtgcgcgag
gacgtcaccgacatcgtcctcaacgtcaagcagatcgcgatccggatgcagggcgagggg
cccaagcggctccagcttgcggtgaccggccccgccgaggtcaaggccggcgacatcgcc
gtgtcgggcgacatcgagatcatgaacaaggatcttgtgatctgccacctcgatgaaggc
gcgacgctcaacatggagctgaccgccgataccggcaagggctacgttcccgccgtgggc
aaccgcccggtcgatgccccgatcgggctgattccggtcgattcgctgtactctccggtg
cgccaggtgagctacaaggtcgataacgctcgcgtcgggcaggaactcgatttcgacaag
ctgagcctgacgatcgagaccgatggcaccgtgactccggaagatgccgtggcctacgcc
gcgcggattcttcaggaccagctcgcgctcttcgtccacttcgacgacagcatgccttcg
ggcacccacgtcccgtcgatggccggccttcccgcgcacaccgcggacgagagcgacacc
aaccagctcaaccgttacctgctcaagaaggtcgacgagctggagctgtcggtgcgttcg
gccaactgcctcaagaacgacaacatcatctacatcggcgatctggttcagaagaccgag
gccgagatgctgcgcaccccgaacttcggccgcaagtcgctcaacgagatcaaggaagtc
ctcagctcgatgggcctgcgcctgggcatggacatccccggctggccgcccgagaacatc
gaggaaatggccaagaagctcgagcaggaactgctgggctga
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