Nordella sp. HKS 07: G5V57_09165
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Entry
G5V57_09165 CDS
T06462
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
noh
Nordella sp. HKS 07
Pathway
noh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5V57_09165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noh03019
]
G5V57_09165
Enzymes [BR:
noh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5V57_09165
Messenger RNA biogenesis [BR:
noh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5V57_09165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QIG47873
LinkDB
All DBs
Position
1950434..1951735
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AA seq
433 aa
AA seq
DB search
MTHFKDLGLDAALLKALDQQGYQTPTPIQAASIPELLKGTDLLGIAQTGTGKTAAFALPI
LDRLSKLKGRPDRGTCRALILSPTRELAAQIGESFRTYGKFLRLTQAVVFGGVSINNQIR
TVGNGVDILIATPGRLVDLIDRRVLSLGKIEVFVLDEVDQMLDLGFIHAIRKITGLLPAK
RQNLFFSATMPKEIAGLAAALLRDPVRVEITPVATTAERVNQSIIHVETRNKLGLLLDLL
ENGAMPRTLVFTRTKHGADKVVKGLIQKRIEAAAIHGNKSQSQRELALAGFKSSKLRVLV
ATDIAARGIDVDGVSHVVNYDLPFVPDSYVHRIGRTARAGASGEAVAFCDPEERPLLRDI
ERTIRQKIPVAQHALSIAAPEGNERSGGPQGHHRPQQNQPSWRKKPGHKQQNGGGKWRPK
QQQRQGGGGGQHR
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
ttgactcatttcaaagaccttggcctcgacgctgcgctcctcaaagcactggaccagcaa
ggctatcagacccccacgccgatccaggcggcgtccattcccgaacttctgaagggcacc
gatctgctcggtatcgcccagaccggcaccggcaagaccgccgccttcgcgctgccgatc
ctcgatcgtctgtcgaagctgaaggggcgccctgaccgcggtacgtgccgggctctcatt
ctgtcgccgacgcgtgaactcgctgcgcagatcggcgagagcttccgcacctacggcaaa
ttcctgcgcctgacacaggcggtcgtcttcggcggtgtttcgatcaacaaccagatccgt
actgtcggtaacggcgtcgacatcctgatcgccacgcctggccggctcgtcgacctcatc
gatcgccgcgtactgagcctcggcaagatcgaggtgtttgttctcgatgaagtcgatcag
atgctggatctgggctttatccatgcgatccgcaagatcaccggcctgcttccggccaag
cgccagaacctgttcttttcggcgaccatgccgaaagagatcgccggcctcgccgccgcc
ctcctcagggatccggtgcgcgtcgagatcacgcctgtggccacgaccgccgagcgcgtc
aaccagagcatcatccatgtcgagacccgcaacaagctcggcctgctgctcgatctgctc
gaaaacggcgccatgccgcgcacactggtcttcacgcgcaccaagcacggcgccgataag
gtggtgaagggcctaatccagaaacgcatcgaggcggccgcgatccacggcaacaagtcg
cagagccagcgcgagcttgcgctcgccggcttcaagagcagcaagttgcgcgtgctggtg
gcgaccgacatcgccgcgcgcggcatcgatgttgacggcgtctcgcatgtggtgaactac
gatctgcccttcgtgccggactcctatgtgcaccgtatcggccgcacggcgcgcgccggc
gcttccggagaggcagtggctttctgcgatccggaagagcgtccgctgctgcgcgacatc
gagcgcaccatccgccagaagatcccggtcgctcagcatgcgctgagcatcgcggcacct
gagggcaatgagcgctcgggcggtccacagggtcatcatcgtccgcagcagaaccagcct
tcctggcgtaagaagcccggccacaagcagcaaaacggcggcggcaaatggcgtccgaag
cagcagcagcgccaaggtggtggcggcgggcaacatcgctaa
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