Nordella sp. HKS 07: G5V57_17740
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Entry
G5V57_17740 CDS
T06462
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
noh
Nordella sp. HKS 07
Pathway
noh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5V57_17740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noh03019
]
G5V57_17740
03009 Ribosome biogenesis [BR:
noh03009
]
G5V57_17740
Enzymes [BR:
noh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5V57_17740
Messenger RNA biogenesis [BR:
noh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5V57_17740
Ribosome biogenesis [BR:
noh03009
]
Prokaryotic type
rRNA helicases
G5V57_17740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QIG49397
LinkDB
All DBs
Position
complement(3765349..3767601)
Genome browser
AA seq
750 aa
AA seq
DB search
MTFLPTIPPLAQALTERSYTEPTPVQAAVLADAAIDRDLLVSAQTGSGKTVAYGLSIARN
LLGDTDRFERNASKPLALIVAPTRELGLQVQRELAWLYQYTGARIVSCVGGMDPRREQRE
LGSGAHIVVGTPGRLCDHLRRRHLDVSKLQAVVLDEADEMLDLGFREDLEFILKETPDTR
RTVLFSATLPRGIVALARQYQKDAFRIEVEGREGGHADIEYRAVRIAARDAEHAAVNVLR
YFESPGAMVFCNTRNTVRHLQAALLERGFSVVALSGELTQNERTHALQALRDGHARVCVA
TDVAARGIDLPNIGLVIHADLPNDPETLQHRSGRTGRAGRKGVSVLLVPPARRRRAEAML
AQTGIEAMWGTAPQAEEIRKLDHQRMLEGPLFTEESSEDDLTLARTMLAERSPEEIAAAL
ARLYRARLPAPEDIADPGPGSGRSRDDRGERREARNARGNDGQTGTETRKTKPEFRPFAA
EGSVWFRLSVGRRKNAEARWLLPMICRRGDIGKQDIGAIRIYGNHSEFEISSEAAERFSN
NLKRPDQEEAIRIEALPGGPQGEAPFEKPADKPEGHGKAYKGKARWNDKPGHKPRQKFHG
EAPPAGPQGESPFEKPADKFASHGKARKGKAHWNDKPGHKPRQKFYDEAHAAGPHGEASF
EKPADKTAGHGKAHKGKAYWNDKPRHKPRQKSHGEAAGDGVPTSATMPGLDKKRPHKHKP
ADAGRPRRDHAAPFAKPTFGKKPKKKKNRG
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
gtgacattcttgccgacaattccgccgctcgcccaagccctgactgagcgcagctatacc
gagccgacgcccgtgcaggcggcggtgctcgccgatgcggcaatcgaccgcgacctcctg
gtttcggcgcagaccggctccggcaagacggtcgcctatggactgtcgatcgccaggaat
ctccttggcgacacggatcgtttcgaaagaaacgccagcaagcccctggccttgatcgtg
gcgccgacacgggagcttggcttgcaggtgcagcgcgagctcgcctggctctatcaatat
accggtgcccgcatcgtatcctgcgtcggcggcatggaccccaggcgggaacagcgcgag
cttggcagtggtgcccatatcgtcgtcggaacgccgggaaggctgtgcgatcacttgcgg
cggcgccatctcgacgtctcgaaattgcaagccgtcgtgctcgacgaggccgatgaaatg
ctcgatctgggcttccgcgaggatctggaattcatcctgaaagagacgccggacacgcgc
cggacggtgctgttctcggcgacgctgccgcgcggaatcgtggcgctggccaggcaatat
cagaaggacgccttccgcatcgaagtcgaagggcgcgaaggcggccatgccgatatcgaa
tatcgcgccgtcaggatcgccgcgcgcgatgccgagcacgcggccgtcaacgtgctgcgg
tatttcgagtcgcccggcgccatggtcttctgcaatacgcggaataccgtccggcatttg
caggccgcactccttgagcgcggattttccgtggtggcgctgtcgggagagctgacgcag
aacgaacgcacgcacgcgctgcaggcgttgcgcgacggacatgcgcgcgtctgcgtggcg
accgatgtcgcggcgcgcggcatcgatctgcccaatatcggcctcgtcattcatgcggat
ctgccgaatgacccggaaaccctgcagcatcgatccgggcgcaccggccgtgcgggccgg
aagggggtcagcgtgctgctggtgccgccggcgcgccgccggcgcgcggaagcgatgctc
gcccagaccggtatcgaggccatgtggggcacggcgccccaggcggaagagatccgcaaa
ctcgatcaccagcgcatgctcgagggtccgctcttcacggaggagtcgagcgaggatgac
ctgaccctggcgcgcacgatgctcgccgagcggtcacctgaggagatcgcggcggcgctc
gccaggctctatcgcgcgcgcctgcccgcgcccgaagatatcgccgatccgggccccggc
agcggccggtcgcgtgacgatcgcggcgagcggcgggaggctcgcaacgcgcgtggcaac
gacggccaaacgggcacggaaacgagaaagacaaagccggagtttcgccccttcgcggcg
gagggcagcgtgtggtttcgcttgagcgtcgggcgcaggaagaatgccgaggcccgctgg
ctgctgccgatgatctgccgccgcggcgacatcggcaagcaggacattggcgccatcaga
atttacggcaaccacagcgaattcgagatctccagtgaggccgcggagcgcttttcaaac
aacctgaagcgccccgaccaggaagaggccatccgcatcgaggcgctgccgggcggcccg
caaggagaagcgccgttcgaaaagcctgccgataaacctgagggccacggcaaggcctac
aagggcaaggcacgttggaacgacaagcccggtcataagccgcgccagaagtttcatggc
gaggccccgccggccggcccgcaaggcgagtcgccattcgaaaagcctgccgataaattt
gcgagccacggcaaagcccgcaagggcaaggcacattggaacgacaagcccggtcataag
ccgcgccagaagttttatgacgaggcccatgcggccggcccgcacggcgaagcgtcgttc
gaaaagcccgccgacaagactgcgggccacggcaaagcccacaagggcaaggcatattgg
aacgacaagccccggcataagccgcgccaaaagtctcatggcgaggccgcgggcgacggc
gttcccacgtccgcgaccatgccgggattggataaaaagcggccgcacaaacacaagccc
gccgatgccggacggccgcggcgcgaccacgccgccccgtttgccaagccaaccttcggc
aagaagccgaagaaaaagaagaatcgcgggtga
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