Nordella sp. HKS 07: G5V57_27295
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Entry
G5V57_27295 CDS
T06462
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
noh
Nordella sp. HKS 07
Pathway
noh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5V57_27295 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noh03019
]
G5V57_27295 (rnr)
03016 Transfer RNA biogenesis [BR:
noh03016
]
G5V57_27295 (rnr)
Enzymes [BR:
noh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
G5V57_27295 (rnr)
Messenger RNA biogenesis [BR:
noh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G5V57_27295 (rnr)
Transfer RNA biogenesis [BR:
noh03016
]
Prokaryotic type
tRNA degradation factors
G5V57_27295 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
RNase_II_C_S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
QIG51101
LinkDB
All DBs
Position
complement(5798937..5801186)
Genome browser
AA seq
749 aa
AA seq
DB search
MARKAKPAQNDLPSAEQLIDFIKTSSGKVGKREIARAFNVKGNDRIALKRLLKELEKDGK
LKRAGRAMAKAGELPPVTVLEVTGRDDDGELIAVPAEWDDAAGKPPRILIIAQAAKGTRA
ESQPAAVGDRVLARIEPVKDPKLPYHGRIIRKIAGRSSRILGIFRHARGMGARVVPVDKK
ARHDLQVQPGHENGAEPGELVSVEVMRGRGQGLATARVKERLGDISSQRNISLIAIEHHG
IPSEFPARTLAEAAALKPFSHAKRTDLRDVPLVTIDPPDARDHDDAVWAEPDDDPKNEGG
VKVIVAIADVATYVHPGSALDREARIRGNSVYFPDRVVPMLPERISNDLCSLREGEERPC
LACFMTFDRTGAKRKHHFARAVMRSVAKLSYQQAQAAIDGRPDDKTEALLAPVLRPLWAA
YKVLLKGRNKREPLELDLPERKLILDAHGLIERVVTPERLDAHKLIEEFMIQANVAAAET
LGERKVPLLYRVHGEPAEEKIRSLAEFLKTVGINLAKGQHMMPRHFNQILKEVEGKDYQH
VVNEVVLRSQAQAVYDTENAGHFGLHLRHYAHFTSPIRRYADLIVHRALITAFGFGDDGL
SPEDTAQLNDTAELVSGAERRAMAAERETVDRLIASHLSSQIGARFAGRIGGVVAAGLFI
TLNDTGADGFIPAGTLGSDYFVYDETRRALIGERSGETFQLGDPVEVRLVEAAPVSGGLR
FEMMSDGRKGKPVPRRSLRQRGMGRAKRR
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgcaaagcgaagccagcgcaaaacgatctgccgtcagccgaacagctcatcgac
ttcatcaagaccagctcaggcaaggtcgggaagcgcgagatcgcgcgcgccttcaatgtc
aaaggcaatgaccggatcgcgctgaagcggcttctcaaggaactggaaaaggacggcaag
ctcaagcgcgccggccgcgccatggccaaggctggcgaactgccgccggtcactgttctg
gaagtcaccggtcgcgatgatgatggcgaattgatcgccgtgccggccgaatgggacgat
gcggcgggcaagcctccccgtatactgatcatcgcgcaagcggccaagggcacgcgcgcg
gaatcccagcctgccgcggttggcgatcgggtgcttgcccggatcgagcccgtgaaggat
cccaagctcccctatcacggccgcatcattcgcaagatcgccggccgcagcagccgaatc
ctcggcatattccgccatgccaggggcatgggcgcccgcgtcgtgccggtcgacaagaag
gcgcgtcatgatttgcaggtccagcccggtcacgagaatggcgccgagcctggcgagctc
gtctccgtcgaggtcatgcgcgggcgcggccagggccttgcgaccgcccgcgtgaaggag
cggcttggcgacatttccagccagcgcaacatttcactgatcgccatcgagcatcacggc
atcccatcggagtttcccgcacgcacgctcgccgaagcagcggccctgaaacccttctca
cacgccaagcgcaccgatctgcgcgatgttcccctcgtcaccatcgacccccccgatgcg
cgcgatcatgacgatgcggtctgggccgaacccgacgatgaccccaagaatgaaggcggg
gtgaaagtgatcgtcgccatcgccgatgtcgcgacctatgtgcatccgggctcggcgctc
gaccgcgaggcacggataaggggcaattccgtctacttccccgaccgcgtcgtgccgatg
ctgccggagcgaatttccaacgatctgtgctccttgcgcgaaggcgaggaacggccttgc
ctcgcctgcttcatgaccttcgatcgcaccggcgccaagcgcaagcaccatttcgcgcgc
gccgtcatgcgctcggtggcgaagctttcctatcagcaggcgcaggccgcgatagatggg
cggcccgacgacaagactgaggccctgctcgcccccgtgctgaggccgctctgggccgcc
tacaaggtgctgctcaagggccgcaacaagcgtgaaccgctcgagctcgatcttcccgag
cgcaagcttatcctcgacgcgcatggcctcatcgagcgggttgtgacgcccgagcgtctc
gatgcccacaagctcatcgaggaattcatgatccaggccaatgttgcggccgccgagacg
ctcggcgagcgtaaggtgccgctcctctatcgcgtccatggcgagcccgccgaggagaag
atccgcagcctggccgagttcctgaagaccgtcggcatcaatctggccaagggccagcac
atgatgccccggcacttcaaccagatcctgaaggaggtcgagggcaaggactatcagcat
gtggtcaacgaggtggtcctgcgcagccaggctcaggccgtctacgacacggagaatgcc
ggtcatttcggcctgcacttgcggcactatgcgcatttcacctcgcccatccggcgatat
gctgacctgattgtgcatcgcgctctcatcactgcattcggcttcggcgacgacggcctt
tcgccggaagacacggcacagctcaatgatacggccgagctcgtctcgggcgccgaaagg
cgggccatggcggcggaacgcgagaccgtcgatcggctgatcgccagccatctttcctcg
cagatcggcgcgcgctttgcgggacgcatcggcggcgttgtggccgccggtctcttcatt
accctcaatgatacgggcgccgatggctttattccggcaggcacgctcggttcagactat
ttcgtctatgacgagacgcgccgtgcgcttatcggggagcgttcgggcgagaccttccag
ctcggcgatccggtcgaggtgcgccttgtcgaggcggcacccgtctcgggcggactgcgt
ttcgagatgatgagcgacgggcgtaaaggcaagccggtaccgcgtcgctcgctgcgccag
cgcggcatgggccgggccaagagacgctga
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