Nocardioides jishulii: FCL41_00575
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Entry
FCL41_00575 CDS
T06163
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
noi
Nocardioides jishulii
Pathway
noi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCL41_00575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noi03019
]
FCL41_00575
03009 Ribosome biogenesis [BR:
noi03009
]
FCL41_00575
Enzymes [BR:
noi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FCL41_00575
Messenger RNA biogenesis [BR:
noi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCL41_00575
Ribosome biogenesis [BR:
noi03009
]
Prokaryotic type
rRNA helicases
FCL41_00575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
P-loop_SecA
Cas3-like_C_2
UvrA_inter
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCX26198
LinkDB
All DBs
Position
125579..127369
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AA seq
596 aa
AA seq
DB search
MSDSAPDPALDDKGGEKGLTFSELDLDPKVLKAITEVGYETPSPIQAATIPSLLAGRDVV
GLAQTGTGKTAAFALPILSNLDLSQKTPQALVLAPTRELALQVAEAFERYSSKMPGVRVL
PVYGGQGYGVQLSALRRGVHVVVGTPGRIMDHLEKGTLDLTELKFLVLDEADEMLKMGFA
EDVETILADTPDSKQVALFSATMPSQIRRISKKHLNDPVEVTVKNKTTTSANITQRYLMV
SYPQKVDALTRILETENFEGMIVFVRTKQVTEALAEKLRARGFSAAAINGDVAQNQRERT
INQLRDAKLDILVATDVAARGLDVERISHVVNFDIPTDTESYVHRIGRTGRAGRKGDSIA
FVTPRERHLLRAIEKATRQPLTQMQLPSVDDVNKKRLSAFDDAITAALSDAEKIEFFRDV
VKHYVNEYDVPEVDVAAAIAAVMHGENPLTLQPEQELLHTPRNDRDDRGRDDRGRGRNDR
PDRERRAPRRAGADSHLATYRISVGKRHKVEPRQIVGALANEGGLGRDDFGKIDIRMDHS
LVDLPADLPPGAWDKLKETRISGKLIELAKDNGPRRSASSSKSYTDKPFKKARHKD
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgagtgactctgcgccggaccctgccctcgacgacaagggaggcgagaagggcctcacc
ttctccgagcttgacctggacccgaaggtcctgaaggccatcacggaggtgggttacgag
accccgtcgccgatccaggctgcgacgattccgtcgctgctcgcgggacgtgacgtcgtc
ggcctcgcccagaccggtacgggcaagacggcggccttcgcgctgccgatcctgtccaac
ctcgacctgtcgcagaagaccccgcaggccctcgtgctcgcgcccacccgtgagctcgcg
ctccaggttgccgaggcgttcgagcgctactcctccaagatgccgggcgtccgcgtgctc
cccgtctacggcgggcagggctacggcgtccagctctccgcgctgcgtcgcggcgtgcac
gtcgtcgtcggtactcccggccgcatcatggaccacctggagaagggcacgctcgacctg
accgagctcaagttcctggtgctcgacgaggccgacgagatgctgaagatgggcttcgcc
gaggacgtcgagacgatcctcgccgacaccccggacagcaagcaggtcgcgctcttctcg
gccacgatgccgagccagatccgccgcatctcgaagaagcacctcaacgacccggtcgag
gtgacggtcaagaacaagaccacgacctcggccaacatcacccagcgctacctgatggtg
tcgtacccgcagaaggtcgacgccctgacgcgcatcctcgagactgagaacttcgagggc
atgatcgtcttcgtccgcacgaagcaggtcaccgaggcgctcgccgagaagctgcgcgcg
cggggcttctccgctgccgcgatcaacggtgacgtcgcccagaaccagcgcgagcgcacg
atcaaccagctgcgcgacgccaagctcgacatcctcgtcgccaccgacgtcgccgcccga
ggcctcgacgtcgagcgcatcagccacgtcgtcaacttcgacatcccgaccgacaccgag
tcctacgtccaccgcatcggccgcaccggccgcgctggccgcaagggcgactcgatcgcc
ttcgtcaccccgcgcgagcgccacctgctccgcgcgatcgagaaggccacccgccagccg
ctcacccagatgcagctgccgagcgtcgacgacgtcaacaagaagcgcctctcggccttc
gacgacgcgatcacggccgccctgagcgacgccgagaagatcgagttcttccgcgacgtc
gtcaagcactacgtcaacgagtacgacgtgcccgaggtcgacgtggctgccgccatcgcc
gcggtgatgcacggtgagaacccgctgacgctgcagcccgagcaggagctgctgcacacg
ccgcgcaacgaccgggacgaccgcggtcgcgacgaccgtggccgtggccgcaatgaccgc
cccgaccgcgagcgccgtgcgccccgccgtgccggtgcggactcccacctcgccacctac
cggatctcggtgggcaagcgtcacaaggtcgagccccgccagatcgtcggcgcgctcgcc
aacgagggcggcctgggccgtgacgacttcggcaagatcgacatccggatggaccactcg
ctggtcgacctcccggccgaccttcccccgggcgcctgggacaagctgaaggagacccgc
atctccggcaagctcatcgagctggccaaggacaacggtccgcgtcgctccgcctcctcg
agcaagtcctacaccgacaagccgttcaagaaggcgcgtcacaaggactga
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