Nocardioides jishulii: FCL41_02905
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Entry
FCL41_02905 CDS
T06163
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
noi
Nocardioides jishulii
Brite
KEGG Orthology (KO) [BR:
noi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noi03019
]
FCL41_02905 (hrpA)
Enzymes [BR:
noi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FCL41_02905 (hrpA)
Messenger RNA biogenesis [BR:
noi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FCL41_02905 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
NACHT
T2SSE
nSTAND3
SLFN-g3_helicase
AAA_23
PhoH
kleA_kleC
Motif
Other DBs
NCBI-ProteinID:
QCX26611
LinkDB
All DBs
Position
621973..625854
Genome browser
AA seq
1293 aa
AA seq
DB search
MSAPTEPTLAITYPEHLPVSQRRDDIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRG
RRRGRGDKASGGLIGHTQPRRIAARSVAERISEELAADGIGTGLGDVVGYQVRFTDQTSR
SSRVKLMTDGILLAELQRDRMLRRYDTIIIDEAHERSLNIDFLLGYLRRLLPKRPDLKLI
VTSATIDVERFAQHFAERDGTPAPIIEVSGRTYPVEVRYRPLMELGSTDEEGETVVRDQT
EAIVDAVRELSTEGPGDVLVFLPGEREIRDTADAFDALKSDRLEIVPLYSRLSAAEQHRV
FSSHPASVRRVVLATNVAETSLTVPGIKYVVDTGVARISRYSVRTKVQRLPIEPISQASA
NQRSGRCGRVSEGIAIRLYSEEDFEGRPEFTDPEILRTNLASVILQMTSLGLGDIARFPF
VEPPDKRNVSAGVQLLEELGAFSTKTSDQKRLTKLGQRLARLPIDPRLGRMILEAEQMGC
VRDVIVIAAALSLQDPRERPADAQAQADQLHARFKDKTSDFLTWLNLWQYVKQQQRDLSS
SAFRRMCKREYLNYLRMREWQDFESQLRQVCKEMKVDLGQARGRRDVNEEGEGGAAYDAD
GIHQALLAGLLSHIGALEERERPRPGAKPTERRQMREYLGARGSRFAIFPGSALKGANPP
FVMAGELVETSRLWARQNAAIKPEWAERLGSHLVKRSFSEPAWSKKRAAVMAKEKVTLYG
VTLVSDRAVNYGSIDPEVARELFIRHALVQGEWDELTSGRHKFFTKNSQLLAEAEELEHR
ARRRDIVVDEHTLFDFYDQRIPADIVSGAHFERWWKQERRVHGNLLTFSLDMLTHDTAEE
VAASDFPTQWHGESLTFPISYHFEPGAADDGLTIEVPVATLNQVEADDFSWLVPGLREEL
VVNLIRTLPKQLRVSFVPAPNTAKAFLAAVPPGEEPLLDSLERFLRATTGVHVPREAWDL
DKLPAHLRPTFKVVGDNGKVAAAGKDLDALKAPLRPTFAAAMAEVAQDTGVTATGQTTWT
FGTIETSFTQRRAGHEVRGYPALTDEGATVGLGVFGSSDEAAARHRLGVRRLLLLALPSA
ELLLDGLSNLEKLALASSPYPTVQEMVEDLRAAVVGDVVDARPAVRDQAAYDALLAVART
ELQRMLPSAFADLAKVLAAWRETEKALSGRADLYTLPALTDMRAQLERLVHRGFLGEAGA
AQLRHYPRYLAAIVERREKLAGQVARDRQLMDQVADLQESWLHQMAALPQGRPPTAHLRE
ARWMLEEYRVQLWAQHLGTAMKVSDQRIRKALG
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgcccaccgaacccacgctcgcgatcacctatcccgagcacctgccggtctcg
cagcgacgcgacgacatcgcggcagcgatccgcgaccaccaggtcgtgatcgtggccggg
gagaccggctccggcaagacgacccagctgcccaagatctgcctcgagctggggcgcggt
cgtcgccgcggacgcggggacaaggcgtccggtggcctgatcggccacacccagccgcgg
cgcatcgccgcccgctcggtggccgagcggatcagcgaggagctggccgccgacggcatc
gggaccggcctcggcgacgtggtcggctaccaggtgcgcttcaccgaccagacctcgcgc
tcgtcgcgggtcaagctgatgaccgacggcatcctgctggccgagctccagcgcgaccgg
atgctgcgcaggtacgacacgatcatcatcgacgaggcccacgagcgcagcctcaacatc
gacttcctgctcggctacctgcgccgcctgctgccgaagcgtcctgacctcaagctgatc
gtcacgtccgccaccatcgacgtcgagcgcttcgcgcagcacttcgccgagcgcgacggc
acccccgcaccgatcatcgaggtctccgggcggacgtaccccgtcgaggtccgctaccgg
ccgctgatggagctcggttcgaccgacgaggagggggagacggtcgtccgcgaccagacc
gaggccatcgtcgacgccgtccgtgagctctcgaccgagggccccggcgacgtgctcgtc
ttcctccccggcgagcgggagatccgcgacaccgccgacgccttcgacgcgctcaagtcc
gaccggctggagatcgtgccgctctactcgcggctctccgccgccgagcagcaccgggtc
ttctcctcccaccccgcctccgtgcgccgcgtggtgctggcgaccaacgtcgccgagacc
tcgctgaccgtgccgggcatcaagtacgtggtcgacaccggcgtggcccgcatctcccgc
tactcggtgcgcaccaaggtgcagcgcctgcccatcgagccgatcagccaggccagcgcc
aaccagcgctcggggcggtgcgggcgcgtcagcgagggcatcgcgatccgcctctactcg
gaagaggacttcgagggccgcccggagttcaccgacccggagatcctgcgcaccaacctg
gccagcgtcatcctccagatgacgtcgctggggctgggtgacattgcccgcttcccgttc
gtcgagcccccggacaagcgcaacgtctccgccggcgtccagctcctggaggagctgggg
gccttctccaccaagaccagtgaccagaagcgcctgaccaagctcggtcagcggctggcc
cgcctgccgatcgacccacggttgggccggatgatcctcgaggccgagcagatgggctgc
gtgcgtgacgtcatcgtcatcgccgccgcgctctcgctccaggacccgcgcgagcgcccg
gccgacgcgcaggcgcaggccgaccagctgcacgcccgcttcaaggacaagacgtccgac
ttcctgacctggctcaacctgtggcagtacgtgaagcagcagcagcgcgacctgtcgtcg
tcggccttccggcggatgtgcaagcgcgagtacctcaactacctgcggatgcgcgagtgg
caggacttcgagtcgcagctgcgccaggtctgcaaggagatgaaggtcgacctcggccag
gcccgcgggcgccgcgacgtcaacgaggagggcgagggcggcgcagcgtacgacgccgac
ggcatccaccaggccctgctcgcggggctgctctcccacatcggggctctcgaggaacgg
gagcgtccccgccctggcgccaagccgacggagcggcggcagatgcgggagtacctcggc
gcccgcgggtcgcgcttcgccatcttcccgggcagtgccctcaagggcgccaacccgccc
ttcgtgatggccggtgagctcgtcgagacctcgcggctgtgggcgaggcagaatgccgcc
atcaagcccgagtgggccgagcgcctcggctcccacctcgtgaagcgctccttctccgaa
cccgcgtggtcgaagaagcgggctgcggtgatggcgaaggagaaggtgacgctctacggc
gtgaccctggtctccgaccgcgcggtcaactacggctcgatcgaccctgaggtcgcccgc
gagctcttcatccgccacgccctggtgcagggcgagtgggacgagctcacctccgggcgt
cacaagttcttcacgaagaacagccagctcctggccgaggccgaggagctggagcaccgg
gcgcggcggcgcgacatcgtcgtcgacgagcacaccctcttcgacttctacgaccagcgc
atcccggcggacatcgtctccggcgcgcacttcgagcggtggtggaagcaggagcggcgg
gtgcacggcaacctcctgaccttcagcctcgacatgctcacccacgacaccgccgaggag
gtcgcggccagcgacttcccgacccagtggcacggcgagtcgctgaccttcccgatcagc
taccacttcgagccgggggcggccgacgacggcctcaccatcgaggtgccggtggcgacc
ctcaaccaggtcgaggccgacgacttctcgtggctggtgccggggttgcgcgaggagctg
gtggtcaacctcatccgtacgctccccaagcagctgcgggtctcgttcgtgccggcgccc
aacacggccaaggccttcctggctgccgtgccgccgggggaggagccgctgctggactcc
ctggagcgcttcctgcgcgcgacgaccggcgtgcacgtgccgcgcgaggcgtgggacctc
gacaagttgccggcccacctgcgacccaccttcaaggtcgtcggcgacaacggcaaggtc
gccgcggccggcaaggacctggacgccctcaaggcaccgctgcggcccacgttcgcggcg
gcgatggccgaggtcgcccaggacaccggcgtcacggcgacgggccagacgacgtggacc
ttcggcaccatcgagacctccttcacccagcggcgcgccggccacgaggtgcgcggctac
ccggcgctcaccgacgagggcgccaccgtgggcctgggcgtcttcggatcgtccgacgag
gctgcggcgcggcaccggctcggcgtacgccgcctcctgctgctcgcgctgcccagcgcc
gagctcctcctcgacggcctctccaacctcgagaagctggccctggcgtcgtcgccctac
ccgaccgtgcaggagatggtggaggacctgcgcgccgccgtcgtcggtgacgtcgtcgac
gcgcgacccgcggtgcgcgaccaggcggcgtacgacgccctgctcgccgtcgcccgcacg
gagctgcagcgcatgctgccgagcgccttcgccgacctcgccaaggtgctggccgcctgg
cgcgagaccgagaaggcgttgtcgggacgggcggacctgtacacgctgccggcgctgacc
gacatgagggcgcagctggagcgactggtgcaccgtggcttcctcggcgaggccggggcc
gcacagctgcgtcactacccgcgctacctcgcggcgatcgtcgagcggcgcgagaagctg
gccgggcaggtggcccgggaccgccagctcatggaccaggtcgccgatctccaggagtcg
tggctccaccagatggcggcgctgccccagggccgtccgcccaccgcccacctgcgtgag
gcgcgctggatgctggaggagtaccgggtgcagctgtgggcgcagcacctcggcaccgcg
atgaaggtgagcgaccagaggatccgcaaggccctgggctga
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