Nocardioides jishulii: FCL41_10430
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Entry
FCL41_10430 CDS
T06163
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
noi
Nocardioides jishulii
Brite
KEGG Orthology (KO) [BR:
noi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noi03019
]
FCL41_10430 (hrpB)
Enzymes [BR:
noi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FCL41_10430 (hrpB)
Messenger RNA biogenesis [BR:
noi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FCL41_10430 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
AAA_19
AAA_30
AAA_11
RoxA-like_Cyt-c
AAA_16
ParA
ResIII
HA2_N
nSTAND3
CON_HrpB
Motif
Other DBs
NCBI-ProteinID:
QCX29222
LinkDB
All DBs
Position
complement(2216214..2218730)
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AA seq
838 aa
AA seq
DB search
MLAAPPDLPVAAGLAALDEALRSHGVAVVHAPPGTGKTTLVPPAVAGVVEGRVVVTQPSR
IAARAAARRLAHLLGEPVGETVGYSVRGDRRTSPRTRVEVVTTGLLLRRIQHDPELAGVG
AVVLDEVHERHLDADLTLALLIDIRANLRDDLALVAMSATIEAERTATLLAGDGEGAPVI
HVPGALHPVQTVWCPLPAGLRRTDDRGITPAFHDHVAATVRRGLAEHEGDVLVFVPGVAE
VDATVRRLAGVAADVHPLHGRLSGAEQDRALTEGPRRRVIVSTAVAESSLTVPGVRIVVD
AGFSREPRTDHRRGLASLVTVAVSRAAAEQRAGRAGRLGPGAVLRCWSQAEHAHLAAHPE
PEIATADLTAFALEVACWGSDDVADLALLDQPPAHALASAREVLVELGAMTEDGRATARG
RVIAGVPTDPRLARALIDGVPLVGARRAAEVVAMLSEDVRAPGADLVAALRSLRGGQHSG
SWRSQVKRLEDIASKQAAGGRGAVADAGHRLTDDVAVGLVVALAHPDRIARKRPGSSSYL
MTSGTGAALDARDPGLVRVEWLAVGDADRRPGQRDARIRAAAPLTEDLALEAAGSQWREV
DEVIWSGGRVQARRRTLLGAIELGSVPLSDPPAQAVTEAISRALSSEGIGLLNWSEAATA
LRARLDFLHRALGDPWPDVSDEALTQNLHEWLGPQLARVRSAADLRRIDLVAALRALLPW
PQAGRLDELAPERVEVPSGSSVRIDYSAEQPVLAVRLQEVFGWTAAPTLADGRVPLLLHL
LSPARRPAAVTADLESFWDNGYPGVRADLRGRYPKHSWPEDPRSATPTRRTNAARPRR
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
ctgctcgccgcaccgcccgacctcccggtcgccgcggggctcgcggccctcgacgaggcg
ctccgcagccacggggtcgcggtggtccacgcgccgcccggtacgggcaagacgaccctg
gtgccgcccgcggtcgccggcgtcgtcgagggccgggtcgtcgtcacccagcccagccgg
atcgcggcgcgcgccgccgcccgacggctggcgcacctgctgggagaaccggtgggggag
accgtcggctactcggtacgtggcgaccggcgcaccagcccgcgtacgcgcgtcgaggtc
gtcacgaccggcctgctgctgcggcggatccagcacgaccccgagctggccggtgtgggc
gccgtcgtgctcgacgaggtgcacgagcgccacctcgacgccgacctgaccctggcgctg
ctgatcgacatccgcgccaacctgcgcgacgacctggcgctggtggcgatgtcggccacc
atcgaggcggagcggacggccacgctgctcgccggggacggcgagggggcgccggtcatc
cacgttcccggggctttgcacccggtccagacggtctggtgcccgctgcccgcggggttg
cgccgcaccgacgaccgggggatcacccctgccttccacgaccacgtcgccgcgaccgta
cgccgcgggctcgccgagcacgagggcgacgtgctggtcttcgtgccgggtgtcgcggag
gtcgacgcgaccgtacgccgtctggccggcgtggctgcggacgtgcacccgctgcacgga
cgtctctccggcgccgagcaggaccgcgcgctcaccgagggcccgcgtcgccgagtcatc
gtctccaccgcggtggcggagtcgtctctgacggtgccgggcgttcgcatcgtggtggac
gccggattttcccgcgagccgcggaccgaccaccgtcgcggtctggcgtcgctggtcacc
gtcgcggtgagccgagcggcggccgagcaacgcgcgggccgcgccggacgtctggggccg
ggcgcggtgctgcggtgctggtcgcaggccgagcacgcccacctggccgcccacccggag
cccgagatcgccaccgccgacctgaccgccttcgcgctggaggtggcgtgctgggggagt
gacgacgtggccgacctggcgctgctcgaccagccgccggcgcacgcgctggcctccgcc
cgggaggtgctcgtcgagctgggggcgatgaccgaggacggcagggccaccgcgcgcggc
cgggtgatcgctggcgtgccgaccgatccgaggctggcgcgggccctcatcgacggggtg
cctctcgtcggggccagacgtgcggcggaggtggtcgcgatgctgagcgaggacgtacgc
gctcccggcgccgacctggtggcggcgttgcggtcgctgcgcggcggccagcactcggga
tcgtggcgcagtcaggtcaagcggctggaggacatcgcgtcgaagcaggccgcgggtggc
cggggagcggtggccgacgctggccaccgcctcaccgatgacgtggcggtcgggttggtg
gtggccctggcgcacccggacaggatcgctcgcaagcgccccgggagctcgagctacctg
atgacgtcggggacgggcgctgccctcgacgcccgcgacccagggctggtccgcgtcgag
tggctcgccgtgggcgacgcggatcgacgaccggggcaacgtgacgcccggatcagggcg
gcggccccactcaccgaggacctcgcgctggaggccgcagggtcgcagtggcgggaggtc
gacgaggtcatctggagcgggggcagggtgcaggcgcgccggcgtacgctgctgggcgcg
atcgagctcggctccgtccccctcagtgatccacccgctcaggccgtgaccgaggcgatc
tcccgggcgctgagcagcgaggggatcggtctgctgaactggtcggaggcagcgacggcg
ctgcgcgcacgcctcgacttcctgcaccgtgcgctcggtgacccgtggccggacgtgagc
gacgaagcactgacgcagaacctccacgagtggctggggccgcagctggcgcgggtccgc
tcggcggcggacctgcgccgcatcgacctcgtcgccgcgttgcgggcgctgttgccgtgg
ccgcaggctggccggctcgacgagctggcacccgagcgggtggaggtgccgagcggctcg
agcgtgcggatcgactactcggccgagcagccggtgctggccgtgcggttgcaggaggtc
ttcggctggacggcggcgccgacgctcgcggacggccgcgtgccgctcctgctgcacctg
ctctcgcccgcgcggcgaccggcggccgtcaccgcggacctggagtccttctgggacaac
ggttatccgggcgtacgagctgacctccgtgggcgctaccccaagcactcctggccggag
gatccgcgcagtgcgacgcccacgcggcgtacgaacgcagctcgcccgcgtcgttga
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