Noviherbaspirillum sp. UKPF54: FAY22_00735
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Entry
FAY22_00735 CDS
T06116
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nok
Noviherbaspirillum sp. UKPF54
Pathway
nok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAY22_00735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nok03019
]
FAY22_00735
Enzymes [BR:
nok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FAY22_00735
Messenger RNA biogenesis [BR:
nok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FAY22_00735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
P-loop_SecA
AAA_22
MerR-DNA-bind
Motif
Other DBs
NCBI-ProteinID:
QDZ26620
UniProt:
A0A5B8MZT4
LinkDB
All DBs
Position
157533..158969
Genome browser
AA seq
478 aa
AA seq
DB search
MSHTPLATPQTGAPAVRFEDFGLSADILRALADQGYVHPTPIQAEAIPVVLQGRDVMGAA
QTGTGKTAGFSLPIIQLLLAHANASASPARHPVRALILTPTRELADQVADNVKAYSRHTP
LRSVVVFGGVDMAPQTAALRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLD
MGFLPDLQRIINLLPKERQNLMFSATFSPEIKKLANSFLKNPVTIEVARSNATADNVTQV
LYKVDEEAKRDAVAHIIRERGLKQVIVFSNTKIGASRLSRHLEKEGVKAAAIHGDKTQGE
RMAALEAFKQGGIEVLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASG
DAISLFTDKDARQLADIEKLIKHTISRLQLTGFVPPRSADRRVRHEDSEERQERHGAARS
SYGRSNYAPRKEKVDPWFLKPYEPAPQSEPKEEGKAAQPGAAKQKAKVAALLGGMPKR
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacaccccgttagcaaccccgcaaaccggcgcaccggctgtccgcttcgaagac
ttcggactgtccgccgacattttgcgcgcgctcgccgaccaaggttatgtacatccgacg
ccgatccaggccgaggcgatccccgttgtcctgcaaggccgcgacgtcatgggcgcggcg
cagaccggcaccggaaaaacggccggtttctccttgcccatcatccagttgctgctcgcg
catgcgaatgccagcgcgtcgcccgcgcgccatccggtgcgcgcgctgatcctgacgccg
acgcgggaactggccgaccaggtggccgacaacgtcaaggcgtattcgcgccatacgccg
ctgcgctccgtcgtggtgttcggcggcgtcgatatggcgccgcagaccgctgccttgcgc
gccggcgtcgagatcgtgatcgccacgccgggacgcctgctcgaccatgtgcagcaaaag
accgtgaacctgtcgcagacccagatcctggtgatggacgaagccgaccgcatgctcgac
atgggcttcttgcccgacctgcagcgcatcatcaacctgctgccgaaagagcgccagaac
ctgatgttttccgcgaccttctcgccggagatcaagaagctggcgaacagcttcctgaag
aacccggtgacgatcgaagtggcgcgctccaacgctaccgccgacaacgtcacgcaggtg
ctgtacaaggtcgacgaggaagccaagcgcgacgcggtggcgcacatcatccgcgagcgc
ggcctgaagcaggtgatcgttttttctaataccaagatcggcgcatcgcgcctgtcgcgc
catctggaaaaggaaggcgtcaaggcggcggcgatccatggcgacaagacccagggcgaa
cggatggccgcgctcgaagccttcaagcagggcggcatcgaagtgctggtcgccaccgac
gtggccgcgcgcggcctggatatcgccgaactgccgtgcgtgatcaatttcgacttgccg
tacaacgccgaggactacgtgcaccgcattggacgtaccggccgcgccggcgcttccggc
gacgcgatctcgctgtttaccgacaaggatgcgcggcagctcgccgacatcgaaaagctg
atcaagcacaccatctcgcgcctgcagctgaccggtttcgtgcctccgcgttcggccgac
cgccgcgtgcgtcatgaagacagcgaagagcgccaggagcgccacggcgcggcgcgttcc
tcgtacggacgcagcaactatgcgccgcgcaaggaaaaggtcgacccctggttcctcaag
ccgtacgagccggcgccgcaaagcgagccgaaggaagagggtaaggcggctcaacccggc
gcggccaagcagaaggccaaggtggcggcgctgctgggcgggatgccgaagcggtaa
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