Noviherbaspirillum sp. UKPF54: FAY22_04660
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Entry
FAY22_04660 CDS
T06116
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nok
Noviherbaspirillum sp. UKPF54
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nok03019
]
FAY22_04660 (hrpA)
Enzymes [BR:
nok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FAY22_04660 (hrpA)
Messenger RNA biogenesis [BR:
nok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FAY22_04660 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
AAA_30
ResIII
AAA_25
SRP54
TsaE
SLFN-g3_helicase
PhoH
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QDZ27305
LinkDB
All DBs
Position
978644..982522
Genome browser
AA seq
1292 aa
AA seq
DB search
MSELEQARKTPSKPRQPQAKQTVPAVRNPLPPITFPEELPVSGRRREIADALRKHQVIIV
SGETGSGKTTQLPKICLELGRGQSGLIGHTQPRRIAASSTAKRIAQELGSPLGEHVGFKV
RFTDTLSAGASVKLMTDGILLAETQTDPLLKQYDTIIIDEAHERSLNIDFLLGYLKQLLP
RRPDLKIIITSATIDAERFARHFGQPERPAPVIEVSGRLYPVEVRYRPVESNDKTEGKPS
SQKEQRDLIDAVVDAVDELARIGPGDVLVFLPGEREIRDAAEALRKHHPPHVEILPLFAR
LSVQEQERVFKPSNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQIE
PVAQSAANQRAGRCGRVAAGVCIRLYDEKDYQQRPKFTDPEILRSSLAAVILRMKSLRLT
DVETFPFIEPPLGRAIADGYQLLQELGATDDDNQLTQLGRQLAKLPLDPRVGRMILAGRD
NAALTEMLVIASALSVQDPRDRPMEAQDAADNAHKKFADEKSEFLSYLKIWKWFEDAVEH
KKSNKQLMESCRANFLSQLRLREWRDVHSQLLTLVREQGWRLNEAPATYEQLHTALLTGL
LGNVGYKMEDEPQYLGARGIKFHIWPGSSLAKKAGRWIMAAELVETSRLYARCIAQIQPE
WLERVGGHLLKKSWGDPRWEKRTAQVSAFERATLYGLVVYSQRRINFGAINPKEARDIFI
RSALVGGDYETRAPFLAHNQKLVREIESLEHKSRRLDVLVDEELIAAFYDKLVPQDVYNG
AAFEKWLKDATAKNPKLLHLNRDDLMRHEAAGVTTDLFPKKMAVAGVDMALTYHFEPGSA
RDGVTLTIPLYALNQVSAERCEWLVPGMLKEKVHMLLKSLPQKLRRHCVPLPDYAAGFCE
RAEFGKGDLIDAVIADVREQTGVTVKTADFKLETLPAHHFMNFKIVDEHGRQLEMGRNLP
ALQAEFGGQAREKFQQLAEKTVAAPAETGSAGSRRDGSQPSASGAAHSAGAHQNLTTWSF
GELPELLEIQQGKQTLIGFPALVDKATHCDLEVFDDPAEAARVHRIGLRRLFALQLKEQL
KYLEKNVPGLQQMGMQFMSLGTQEELRDQIIQAGLERACLQEPLPKNADEFNRRKEEGKS
RLGLLVNEIARLASQILAEYYTLPKKLQGVKSHAQSAVDMQSQLQVLVGKRFIAENDYAQ
LAHFPRYLKAIGVRLDKLRADPARDQRLMAEWAQVAMPWQRAQKGQKSSDPKMQEFRWLL
EELRVSLFAQELRTPMPVSVKRLQKVWESMQR
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaactagaacaagccagaaaaactccgtccaagccgcgccagccgcaggcaaag
caaaccgtgcctgccgtgcgcaatcccttgccgccgattacctttcccgaagaattgccg
gtctcgggccggcgccgggaaattgccgacgcgttgcgcaagcaccaagtcatcatcgtc
agcggcgaaaccggctccggaaaaaccacgcagctacccaagatctgcctcgaactggga
cgcggccagtccggcctgataggccacacgcagccgcgccgcattgccgcgtcgtcaacc
gccaagcgcatcgcgcaggaactcggctcgccgctgggcgaacacgtcggcttcaaggtg
cgcttcaccgacacgctgtctgccggcgcgtcggtcaagctgatgaccgacggtatcctg
ctggcggaaacgcagaccgacccgctgctgaaacaatacgacaccatcatcatcgacgag
gcgcatgagcgcagcctcaatatcgatttcctgctcggctacctcaagcagctgctgccg
cgtcggcccgatctgaagatcatcattacctcggccaccatcgatgccgagcgttttgcg
cggcatttcggccaacccgagcgtcccgcgccggtgatcgaagtctcggggcgcctgtat
ccggtggaagtccggtaccggccggtggaatcgaacgacaaaaccgaaggcaagccttcc
tcgcagaaggaacagcgcgacctgatagacgcggtggtcgacgcggttgacgaactggcg
cgcatcggccctggcgacgtgctggtgttcctgccgggcgaacgcgaaatccgcgatgcg
gccgaagccttgcgcaagcatcatccgccccacgtggaaatcctgccgctgttcgcccga
ctgtcggtgcaggagcaggagcgcgtgttcaagccgtccaacgcgcgccgcatcgtgctg
gccaccaatgtcgccgaaacctcgctgacggtgcccggcatccgttacgtggtcgatacc
ggcctggctcgggtgaagcgttacagctatcgcaacaaggtcgagcagctgcagatcgaa
cccgtcgcgcaatcggccgccaatcagcgcgccggccgctgcggccgcgttgctgccggc
gtctgcatccgactgtacgatgagaaggattaccagcagcggccgaaattcaccgatccg
gaaatcctgcgttcgtcgctggcggccgtcatcctgcgcatgaaatcgctgcgcctgacc
gatgtcgagacctttccgttcatcgagccgccgctgggccgcgccattgccgatggctac
cagctgctgcaggagctcggcgccaccgacgacgacaaccagttgacccagctcggccgc
cagctggcgaagctgccgctcgacccgcgcgtgggacgcatgatcctggccgggcgcgac
aacgcggcattgaccgagatgctggtcatcgcgtcggcgctgtcggtgcaggacccgcgc
gaccgcccgatggaggcgcaggatgccgccgataacgcgcataaaaaattcgcggacgag
aaatcggaattcctgagctacctgaagatctggaagtggttcgaggatgcggtcgagcac
aagaaatccaacaagcagctgatggagtcctgccgcgccaatttcctgtcgcagctgcgc
ctgcgcgaatggcgcgacgtgcattcgcaattgctgacgctggtgcgcgagcagggctgg
cgcctgaacgaggcgccggccacctacgaacagctgcatacggcgctgctgacgggactg
ctcggcaatgtcggctacaagatggaagacgagccgcagtacctcggcgcgcgcggcatc
aagttccatatctggccgggctcgtcgctggcgaagaaggccgggcgctggatcatggcg
gccgagctggtggagacatcgcgcctgtacgcgcgctgcatcgcgcagatccagccggag
tggctggagcgcgtcggggggcatctgctgaagaaatcctggggcgatccgcgctgggaa
aagcgtaccgcgcaagtatccgccttcgagcgcgcgacgctctatggattggtggtctat
agccagcggcgtatcaatttcggcgcgatcaatccgaaggaagcgcgcgacatcttcatc
cgcagcgcactggtgggcggcgactatgagacgcgggcgcctttcctcgcacacaaccaa
aagcttgtgcgcgagatcgaaagcctcgaacacaagtcgcgccggctcgacgtgctggtc
gatgaggagctgatcgcggcgttctacgacaagctggtcccgcaggatgtctacaacggc
gcagcgttcgagaagtggctcaaggatgcgacggcaaagaatccgaaactgctgcacctg
aaccgtgacgacctgatgcggcacgaggcggcgggcgtgaccaccgacctgtttccgaag
aagatggcggtggccggcgtcgacatggcgctgacctatcacttcgagccgggcagcgcg
cgcgacggcgtcacgctcaccattccgctgtacgcgctgaaccaggtgtcggccgagcgc
tgcgaatggctggtgccgggcatgctaaaggaaaaggtgcacatgctgctcaagtcgctg
ccgcagaaattgcgccgccattgcgttccattgccagactacgcggccggcttctgcgag
cgggccgaattcggcaagggcgacctgatcgacgccgtcatagccgacgtgcgcgagcag
accggcgtgacggtaaagaccgccgacttcaagctggagaccctgccggcgcaccacttc
atgaatttcaagattgtcgacgaacacgggcgacaactggagatggggcgcaatttgccc
gccctgcaggccgagttcggcgggcaggcgcgggagaaatttcaacagctggctgaaaag
acggtggctgcgcccgctgaaaccggctccgccggctccaggcgcgacggctctcagccg
tcggcatcgggcgcggcgcacagcgccggcgcgcatcagaacctcaccacctggtccttc
ggagagcttccggaactgctcgaaatccagcagggcaagcagacgttgatcggctttccg
gcgctggtggacaaggccacgcattgcgacctcgaagtgttcgacgacccggcggaagcg
gcgcgcgtgcaccgcatcggcctgcgccgcctgttcgcattgcagttgaaggaacagctc
aagtacttggaaaagaacgttccaggcctgcagcagatgggcatgcaattcatgtcgctc
ggcacgcaggaagagttgcgcgatcagatcatccaggcaggactggagcgcgcctgcctg
caggagccgctgccgaagaatgcggatgagttcaaccggcgcaaggaggaaggcaagtcg
cgcctgggcctgctggtcaatgaaatcgcgcgccttgcatcgcaaatcctggccgagtac
tacacgctgccgaaaaagctgcaaggcgtgaaatcgcatgcgcagagcgcggtggacatg
cagtcgcagctgcaggtgctggtcggcaagcgcttcatcgccgagaacgactatgcgcag
ctcgcgcactttccgcgttatctgaaggcgatcggcgttcgcctcgacaagctgcgtgcc
gatcccgcgcgcgaccagcgcctgatggccgaatgggcgcaggtggcgatgccgtggcag
cgcgcgcagaaaggacagaagagcagcgatccgaaaatgcaggaattccgctggctgctg
gaagagctgcgggtgtcgctgttcgcgcaggagctgcgcacgccgatgccggtatcggtc
aagcgcctgcaaaaggtatgggaatcgatgcagcgttga
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