Noviherbaspirillum sp. UKPF54: FAY22_05005
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Entry
FAY22_05005 CDS
T06116
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nok
Noviherbaspirillum sp. UKPF54
Pathway
nok03410
Base excision repair
nok03430
Mismatch repair
nok03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FAY22_05005 (recJ)
03430 Mismatch repair
FAY22_05005 (recJ)
03440 Homologous recombination
FAY22_05005 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nok03400
]
FAY22_05005 (recJ)
DNA repair and recombination proteins [BR:
nok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FAY22_05005 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FAY22_05005 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FAY22_05005 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QDZ27369
UniProt:
A0A5B8N1X6
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Position
complement(1053395..1055089)
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AA seq
564 aa
AA seq
DB search
MTRITTRSFSFRSAELLRQQGVHPVLARLYAARGLNDMRELSSELGALIAPAGLLHIDAA
AAFLADAIAGGKKLVIVADYDCDGATACAVALRGLRMLGARVDFIVPNRFEYGYGLTPEI
VELTVREKSPDIIVTVDNGIASIDGVAEANRRGIEVVVTDHHLPGDALPNARVIVNPNQP
SCGFPSKNLAGVGVMFYVLLALRAEMRKRGIFDAQSQPKLDALLDLVALGTVADVVKLDA
NNRILVAQGIKRMRAGRMQPGVAALFRAAGREARRATPFDLGFALGPRLNAAGRLADMSL
GIECLTTDDEGRAWAIAQQLDTINRERRDIEAEMQDTALLLLDTFNPQDKTTISVFDPSW
HQGVIGIVASRLKDKFYRPTITFAPGGDGLIKGSGRSIAGFHLRDALDLVSKHAPSVITK
FGGHAMAAGLTIRAEAFDAFAAAFEAVGRDWLTQNQLERVIETDGPLEDAYFSTQFIELL
DGQVWGQGFAPPVFCDEFRVLNQRVLKEKHLKLMLEKDGRRYDAIWFGHADSLPERTLVA
YRLDANEYNGVTRVQLMIEHAQAA
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgacccgcattactacccgttccttttccttccgcagcgccgaactattgcgccagcaa
ggcgtgcaccctgtgctggcgcgcctgtacgcggcgcgtggcttgaacgacatgcgcgaa
ctgtccagcgaactgggcgcgctgatcgcgccggcagggctgttgcatatcgatgcggcg
gccgcgtttctggcggatgcgatcgcggggggaaagaagctggtcatcgtcgccgactat
gattgcgacggcgccaccgcctgcgcggtggccttgcgcgggctgcgcatgctgggcgca
cgggtcgatttcatcgtacctaaccgttttgaatacggttacgggctgacgcccgagatc
gtcgaactgaccgtcagggaaaaatcgcccgacatcatcgtcaccgtcgacaacggcatc
gccagcatcgacggcgtggccgaagccaaccggcgcggcatcgaggtcgtcgtcaccgat
caccacctgcccggcgacgcgctgcccaacgcgcgcgtgatcgtcaatccgaaccagccc
tcgtgcggctttccgagcaagaacctggccggcgtgggcgtgatgttctacgtgctgctg
gcgctgcgcgcggaaatgcgcaagcgcggcatcttcgatgcgcaatcgcagcccaagctc
gatgcgctgctcgacctggttgcgcttggcaccgtggccgacgtcgtcaagctcgatgcc
aacaaccgcatcctggtggcgcagggcatcaagcgcatgcgcgccggtcgcatgcagccg
ggcgtggccgcgctctttcgcgccgccggccgggaagcgcggcgcgccacaccgttcgac
ctcggcttcgcgctcgggccgcgcctgaacgcggcgggccgcctggccgacatgtcgctc
ggcatcgaatgcctgaccaccgacgacgaaggccgcgcctgggccatcgcgcagcagctc
gatacgatcaaccgcgagcggcgcgacatcgaggcggagatgcaggatacggcgctgctg
ctgctcgacaccttcaatccgcaggacaagaccaccatcagcgtgttcgatccgtcctgg
caccagggcgtgatcggcatcgtcgcctcgcgcctgaaagacaagttctaccgccccacc
atcaccttcgcgccgggcggcgatggcctgatcaagggttccgggcgctcgatcgccggc
tttcacctgcgcgacgcattggacctggtgtccaagcacgcccccagcgtgatcacgaaa
ttcggcggccacgcgatggcggcggggctgaccatccgcgccgaggcattcgacgccttc
gccgccgctttcgaggcggtcggccgcgactggctcacgcaaaaccagctcgagcgcgtg
atcgaaaccgacgggccgctggaggatgcctatttctccacccagttcatcgaactgctc
gacggccaggtatggggccaggggttcgcgccgccggtgttttgcgacgagttccgcgtg
ctgaaccagcgtgtcttgaaggaaaaacacctgaagctgatgctcgaaaaggatggccgc
cgctacgacgcgatctggttcggccatgccgacagcctgcccgaacgcaccctggtcgcc
taccggctggacgcgaacgaatacaacggcgtgacaagagtgcaattgatgatcgagcat
gcccaggccgcctga
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