Noviherbaspirillum sp. UKPF54: FAY22_05745
Help
Entry
FAY22_05745 CDS
T06116
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nok
Noviherbaspirillum sp. UKPF54
Pathway
nok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAY22_05745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nok03019
]
FAY22_05745
03009 Ribosome biogenesis [BR:
nok03009
]
FAY22_05745
Enzymes [BR:
nok01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FAY22_05745
Messenger RNA biogenesis [BR:
nok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FAY22_05745
Ribosome biogenesis [BR:
nok03009
]
Prokaryotic type
rRNA processing factors
FAY22_05745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QDZ27498
LinkDB
All DBs
Position
complement(1226472..1229318)
Genome browser
AA seq
948 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETSGREQRKSNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARSYFKEGIDVRNASIKDALREGQEIMVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRSVEELQ
WDLNYLMQLWRAIEGASTSAPGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIYEQAQ
QFMTHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSI
DVNSARATRGSDIETTALHTNLEAADEVARQLRLRDLGGLIVIDFIDMENAKNQREVETR
LKDALRYDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIVQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTIILIPNKHLETPH
YKLERIKHDDPRLEEAQASYTMAEEADTDISYGKRQKEEARPRQEAVVKGITPDQPAPIV
ERKPVEPAPAPAPVVQPAEEGFFSRMFGFFRRKPVAPAPAPAPVVEEKPAQARSDRGDRN
GRNRNRGRGRGGRERGDERETPRSEGRQENVKTAAVPAAETAQRPPRPPREQREPREPRE
QREPREQREAREGGEPRRERAERQPRQREERKEAPAEELLNVAAEPIAPVAPATLTAVSD
VEAPEGIPAAEDGTGEQGEERRRRRRRGGRNRNRRDRENGEAIEAGGELEAADEAPADEA
NAAQGQAQAEIAEAAPAAAPVAAEPAAPAPALAVAIEPAPAPAEVAAVETPAKEAVVAEQ
ETAMPAAAVPAEPVAVPVAVAVEPQPVPTSAAPVAERQPEPAAAAMPLDHLRGMLAEAGL
TLAVTDPEKLRAAQEAAAKIVPAPRVPRERKPLPPLSTEPLIQVETRR
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgtttaacgctacgcagcaggaagagttgcgcgtagccattgtcgat
gggcaaaaactcatcgacatcgacatcgagacaagcggacgcgagcagcgcaagtccaat
atctacaaaggtgtgatcacccgcatcgagccgtcgctggaagcctgcttcgtcaattac
ggcgaagagcgccacggcttcctgccgttcaaggaagtcgcgcgcagctacttcaaggaa
ggcatcgacgtgcgcaatgcatcgatcaaggatgccctgcgcgaaggccaggaaatcatg
gtccaggtcgaaaaggaagagcgcggcaacaagggcgcggcgctgacctccttcatttcg
ctggcgggccgctacctggtcctgatgccgaacaatccgcgcggtggtggcgtgtcgcgc
cgggtggaaggcgaagatcggcaggaactgcgcgaaacgatggacaagctcgatctgccg
aacggcatgtcggtcattgcccgcaccgccggtatcggccgcagcgtcgaggaactgcag
tgggacctgaactacctgatgcaattgtggcgcgcgatcgaaggcgccagcacgtccgca
ccgggtgccttcctgatttaccaggaatcgtcgctggtgatccgcgcgatccgcgactac
ttccagcctgatatcggcgagatcctgatcgacaccgacgacatctacgaacaggcgcag
caattcatgacccatgtgatgcccgacatggtgcaccgggtcaagcgctaccgcgatgac
gtgccgctgttctcgcgctttcagatcgaacaccagatcgaaaccgcctattcccgcacg
gtgcctctgccttccggcggcgccatcgtgatcgaccataccgaagccctcgtttcgatc
gacgtcaactcggcccgcgccacgcgcggcagcgatatcgaaacaaccgcgctccacacg
aacctcgaagctgccgacgaagtcgcgcgccagttgcgcctgcgcgacttgggcggcctg
atcgtgatcgacttcatcgacatggagaacgcgaagaaccagcgcgaagtcgaaacccgc
ctgaaagacgcgctgcgctacgaccgcgcccgcgtccagatgggcaagatctcccgcttc
ggcctgatggaactgtcgcgccagcgtctgcgtccatcgctgtccgaaggcagccacgtg
acctgcccgcgttgcaacggcaccggccatattcgcgataccgaatcgtccgcattgcaa
gtcctgcgcatcgtccaggaagaggcaatgaaggaaaactccgccgccatccacgtgcag
gcgccggtcgacgtcgccgcattcctgctgaacgaaaagcgcggcgaaatcctgaagatc
gaaacgcgccatcgcgtgacgatcatcctgattcccaacaagcatctcgagactccgcat
tacaagctcgagcgcatcaagcacgacgatccgcgtctggaagaagcacaggccagctat
acgatggccgaggaggctgataccgacatcagctacggcaagcgccagaaggaagaagcg
cgcccgcgccaggaagccgtggtcaagggcatcaccccggatcagccggcaccgatcgtc
gaacgcaagccggtggaaccggcacccgcacccgcccccgtggtgcagccggcggaagaa
gggttcttcagccgcatgttcggcttcttccgccgcaagccggtcgcaccggcaccggct
ccggcacctgtggtggaagagaaaccggcacaagcccgcagcgaccgcggcgaccgtaat
ggccgtaatcgcaatcgcggccgtggccgcggcggtcgggaacgcggcgatgaacgcgaa
acgccccgtagcgaaggccgccaggaaaatgtgaagacggcagcagtgcctgctgcggaa
acggcgcagcgtccgccgcgaccaccgcgcgagcaacgcgagccgcgcgaacctcgggag
caacgtgagccgcgcgaacaacgtgaagcgcgcgaaggcggcgaaccgcgccgcgagcgc
gcggagcgccagccgcgccagcgggaagaacgcaaggaagcgcctgcggaggagctactg
aatgtcgcagccgaaccgatcgcccccgttgcgccagccacgctgaccgcagtttccgac
gtcgaagcgcccgagggcatcccggcagccgaagacggtaccggcgaacagggtgaagag
cgccgccgtcgccgtcgtcgcggcggccgcaaccgcaatcgccgcgaccgtgaaaacggc
gaggcaatcgaggctggcggcgagctggaagccgccgatgaagcgcctgcggatgaagcg
aacgcggcacaaggtcaggcacaggcagaaatcgccgaagcagcgcctgcggcggcaccc
gtagccgccgagcctgcagccccggcgccggcgcttgccgtagcaatcgagccggccccg
gcgcctgccgaggtcgcagccgtcgaaacgcccgccaaggaagccgtcgtcgccgaacag
gaaactgccatgccggcagccgccgttccggccgaaccggttgcggttcctgttgcggta
gcagtcgagccgcagccggtgccgacgtcggccgcgcccgtggccgagcgtcagcccgag
ccggccgcggccgcgatgccgctggaccatctgcgcggaatgctggccgaggccggcctg
acgctggcggtcaccgacccggagaagctgcgcgcagcgcaggaagcagcagcgaagatc
gttccggcgccgcgcgtgccgcgcgaacgcaagccgttgccgccgctgtcgaccgagccg
ctgatccaggtcgaaacccgtcgttga
DBGET
integrated database retrieval system
