Noviherbaspirillum sp. UKPF54: FAY22_09645
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Entry
FAY22_09645 CDS
T06116
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
nok
Noviherbaspirillum sp. UKPF54
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nok03009
]
FAY22_09645 (rlmD)
Enzymes [BR:
nok01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FAY22_09645 (rlmD)
Ribosome biogenesis [BR:
nok03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FAY22_09645 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
Methyltrans_SAM
RrnaAD
Cons_hypoth95
Methyltransf_23
Methyltransf_32
UPF0020
SnoaL_4
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
QDZ28181
UniProt:
A0A5B8N5E1
LinkDB
All DBs
Position
complement(2088015..2089358)
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AA seq
447 aa
AA seq
DB search
MMQHPIIEIESLDMEGRGVGHLQNEDGTQGKVIFVEGALPGEQVGFQSFRRKPKWEAATL
TELHRESSLRVKPKCAYFGTCGGCAMQHLEPSAQVAIKQRVLEDNLWHLGKVRAETMMRP
IFGPTWGYRYRARLSVRNVQKKGGVLVGFHERKSSFIADMKTCEILPPHVSAMLVPLRHL
VESLSIFEQMPQIELAVGEGVTALVLRNMALLTADDEAKLRAFADEYRIQWWLQPKGPDT
VYPFYPTDVQLQYVLPEFGVRMPFKPTDFTQVNHHINRVLVARALRLLDAQADERIADLF
CGLGNFTLPIATQAREVVGIEGSAALTERALDNARVNGLDKKTTFYSRNLFEATADDFAA
LGKFDRMLIDPPREGAMAVCQAIVGMGESHPDMKPKRIVYVSCNPSTLARDAGFLVHQGG
YILRQAGVVNMFPHTAHVESMAVFELP
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atcatgcagcaccctatcatcgaaatcgagtccctcgacatggaaggccgaggcgtcggc
catttgcagaacgaagacggcacgcaaggaaaagtcatcttcgtggagggcgcgcttccg
ggcgagcaggtgggtttccagtcttttcggcgcaagcccaagtgggaagcggcgacactg
actgaactgcatcgcgaatcatcattgcgggtcaagccgaagtgcgcctacttcggcacc
tgcggcggctgcgcaatgcagcatctggagccctccgcgcaagtcgcgatcaagcagcgc
gtattggaggacaacctgtggcatttgggaaaagtccgtgctgaaaccatgatgcggccg
attttcggtccgacctggggctatcgctatcgggctcgcctatcggtgcgcaatgtccag
aaaaagggcggcgtgctggtcggtttccatgagcggaagtcgtcgtttatcgcggatatg
aaaacctgcgagattcttccgccgcatgtatcggcgatgctggtgccgttgcggcatctg
gtcgagtcgctgtcgatcttcgagcagatgccgcaaatcgaattggccgtcggcgaaggc
gtcacggcgctggtattgcgcaatatggcgctgctcacggcggacgacgaggcaaagctg
agggcgtttgcggatgaataccggattcaatggtggctgcagccgaaaggtccggacacg
gtttatcctttttatccgacagatgttcaattgcaatatgtgcttccggaattcggcgtc
aggatgccgttcaagcctaccgatttcacccaggtcaaccatcatatcaaccgtgttctg
gtggcgcgggcgttgcgcttgctggatgcgcaagctgatgagcggatcgctgacctgttt
tgcggcttggggaatttcactttgccgatcgccacgcaggcacgtgaagtggtcgggatc
gaaggtagtgcggcgctgactgagcgcgcgcttgacaatgcgcgcgtcaatggattggac
aagaaaaccacgttctattcgcgtaacttattcgaggccacggcagatgatttcgcggcg
ctcggcaagtttgatcggatgttgatcgatccgccgcgggagggcgcaatggcggtttgt
caggcgattgtcggcatgggagagtcgcatcccgacatgaagccgaagcgtatcgtatac
gtttcctgcaatccgtcgacgctggcgcgcgatgcaggctttcttgtgcatcagggtggc
tatatcttgcggcaggccggtgtggtgaacatgttccctcatacggcgcacgtggaatcg
atggccgtattcgaactgccttga
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