Noviherbaspirillum sp. UKPF54: FAY22_12245
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Entry
FAY22_12245 CDS
T06116
Name
(GenBank) ATP-dependent exonuclease
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
nok
Noviherbaspirillum sp. UKPF54
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nok03400
]
FAY22_12245
Enzymes [BR:
nok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FAY22_12245
DNA repair and recombination proteins [BR:
nok03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
FAY22_12245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_12
DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QDZ28653
UniProt:
A0A5B8N7A1
LinkDB
All DBs
Position
complement(2663324..2666647)
Genome browser
AA seq
1107 aa
AA seq
DB search
MPQGSMVMREMTPRAYEANGQAVDAAQFTRIACDPRHSVAVEACAGSGKTWLLVARMLRL
LLAGTEPSELLAITFTRKAAQEMRERLLHLLHELALRPEAEVRALLAERGIDERELPGVL
PLARSLYDRVLASPQSLSIDTFHSWFARLVQIAPLSSGVPHGYSLAEVTGELMLDAYSRF
MQSLGDEDNGQVRQALLALYDMVGDWNARRLLDAFVDKRAEWWASLQSGEDAPLAWLREL
CGEDGQCDARLTLWQDGRLTERIQGVARLLGQGTAVNQKRATAIEKALSAGAGIDSFDAL
CNEFFGSDGESRKNTKTKDLQKALEKHFGSDAAAAFDEEFEALGKELKLLRKRSSERTVL
ALNEALFTAGAAFLEQYQAVKAEQRVFDFGDLEWHAYRLLTDEEHAAYLQSRLDARYKHI
LLDEFQDTNPLQWSIVRAWLNAYGDDAQKPSVFVVGDPKQSIYRFRRAEPRVFAAARELL
QAQGAAVLRTNQTRRNASAIVDLLNASFAGNPIFAAQTTLGSQGGSVWRLPLVRSAGGEP
ELESGFALRDPLTTPRAEEEDARRLDEGRAVARAILAARRELAARTGTPGAWSDVMLLVK
KRTYLSAYESALREAGIPFVSDKRGGLLESLEVADLIALLTFLITPGDDRALAHVLKSPI
IGASDDDLIALAQAAEGPWWSRLLAAASDGASPVVKRAAVLLRHWLHAAPRLPVHDLIDL
ILHQGELVVRYAQTAQPSVRQQVLGNIEAFTELALNLDAGRYPSLPKFIDALELLRKSAA
GDAPDEAAVDAAADAVRILTIHSAKGLEAPIVVLVDANHSEAARDDCGILCDWPQDADAP
THFSCFAKKDERGAARDELFAAEDRFRQQEDWNLLYVAITRAKEMLIVSGVAGTRGALAD
GAVDGSWYQRLQGAPELTPELQPDEADNALAAARSQEFSLPIFSPGALPPASVSPPARND
AIDEGIALHALLERLTLATNWPPQVPDAERLTRWLCCPQPMAASVRDKALRIFAEPLLER
FFNPARFRFACNEMEVMNGSELVRFDRAVVFDDEVWILDYKRDLLDSERAAYAGQLARYR
SAARAVFPGKPIRTALITADGRLWELE
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
gtgccgcaagggagcatggtgatgcgggagatgacgccacgcgcatacgaagccaatggg
caggcggtcgacgccgcgcagttcacgcgcatcgcatgcgatccgcgccattcggtggcg
gtggaagcatgcgccggcagcggcaagacctggcttttggtggcgcgcatgctgcgcctg
ctgctggcggggaccgagccttccgagctgctggcgattacattcacccgcaaggcggcg
caggaaatgcgcgagcgcctgctgcacctgctgcacgaactggcgctgcggcccgaagcc
gaggtgcgcgcgctgctggcggagcgcggcatcgacgagcgcgagctgccgggcgtgctg
ccgctggcgcgcagcctgtacgaccgcgtgctggccagcccgcaaagcctgtcgatcgac
accttccacagctggttcgcgcggctggtgcagatcgccccgctgtcgtcgggcgtgccg
cacgggtactccctggcggaagtgaccggcgagctgatgctggatgcgtacagccgcttc
atgcagtcgctcggcgacgaggacaacggccaggtgcggcaggcgctgcttgcgctgtac
gacatggtcggcgactggaatgcgcgccggctgctcgacgccttcgtcgacaagcgcgcc
gaatggtgggcatcgctgcagtccggagaggacgcgccgcttgcctggctgcgggagctg
tgcggtgaggatggtcaatgcgatgcgcggctgacgctgtggcaggacgggcggctgacg
gagcgtatccagggcgtcgcgcggctgctggggcagggaacggcggtcaaccagaaacgt
gcgactgccatcgagaaggccctgagcgcgggcgccggcatcgacagcttcgatgcgctg
tgcaacgagtttttcggcagcgacggagagtcgcgcaagaataccaagaccaaggacctg
caaaaggcgctggaaaagcattttggcagcgatgcagcagccgccttcgacgaggaattc
gaggcgctcggcaaggagctgaaactgctgagaaagcgcagcagcgaacgtaccgttctg
gcgctcaacgaagcgctgtttaccgcgggcgcagccttcctcgagcagtaccaggcggtg
aaggccgagcagcgcgtgttcgattttggcgacctggagtggcacgcctaccgcctgctg
accgacgaagagcacgcggcctacctgcagagccgcctcgacgcgcgctacaaacacatc
ctgctcgacgaattccaggacaccaacccgctgcaatggagcatcgtgcgcgcctggctg
aacgcctacggcgacgatgcgcaaaagccgagcgtattcgtggtgggcgacccgaagcag
tcgatctaccgcttccgccgcgccgaaccgcgcgtgttcgccgccgcgcgcgagctgttg
caggcgcagggagcggcggtgctgcgcaccaaccagacccggcgcaacgcctctgcgatc
gtggacctgctcaacgccagcttcgccggcaacccgatttttgcggcacagaccacgctc
ggatcgcagggaggatcggtgtggcggctgccgctggtgcgttccgccggcggggagcct
gaactggaaagcggcttcgcgctgcgcgacccgctgaccacgccgcgcgccgaggaggag
gacgcgcgccgcctcgacgagggacgcgcggtggcgcgcgcgatcctggcggcgagaagg
gagctggcggcgcgcacgggcacgccgggcgcctggtccgacgtcatgctgctggtgaaa
aagcgcacctatctgagcgcctacgaaagcgcgctgcgcgaggccggcattccgttcgtg
tcggacaagcgcggcggcctcttggagtcgctcgaagtcgccgacctgatcgcgctgctg
accttcctgatcacgccgggagacgacagggcgctggcgcatgtgctgaagtcgcccatc
atcggcgcgtccgacgacgacctgatcgcgctcgcgcaagcggcggaggggccgtggtgg
tcgcgcctgctggcggcggcatcggacggcgcatcgcctgtcgtcaagcgggctgccgtg
ctgctgcggcactggctgcatgcggcgccgcgcctgccggtgcacgatctgatcgacctg
atcctgcaccagggcgagctggtggtgcgctatgcgcagaccgcgcagccgtcggtgcgc
cagcaggtgctgggcaatatcgaggctttcaccgagcttgcgctcaacctcgatgccggc
cgttacccgagcctgccgaaattcatcgatgcgctcgaactgctcagaaagagcgccgcc
ggcgacgcgccggacgaagcggccgtcgatgccgcggccgatgcggtgcgcatcctgacg
atccatagcgcgaaggggcttgaggcgccgatcgtggtgctggtcgacgccaatcacagc
gaggcggcgcgcgacgattgcggcatcctgtgcgactggccgcaggacgcggatgcgccg
acgcacttctcctgcttcgcgaaaaaggatgagcggggcgccgcgcgcgatgaattgttc
gcggccgaagatcgcttccggcagcaggaagactggaacctgctctacgtggcgatcacg
cgcgccaaggaaatgctgatcgtcagcggcgtggccggcacgcgcggcgcactggccgac
ggcgccgtcgacggcagctggtaccagcgcttgcagggcgcgccggagctgaccccggag
ctgcagccggatgaggcggacaacgcgctggccgccgcgcgcagtcaggaattcagcctg
ccgatcttcagcccgggagcgctgccgccggcaagcgtctcgccgccggcccgcaacgac
gccatcgacgaaggcatcgcgctgcatgccctgctggagcgcctcacgctggcgacgaac
tggccgccgcaggtgccggacgccgagcgcttgacgcgctggctgtgctgcccgcagccg
atggcggcgagcgtgcgggacaaggcgttgcgaatattcgccgagccgctgctggagcgc
ttcttcaatccggcccgcttccggttcgcatgcaacgaaatggaagtcatgaacggcagc
gagctggtgcgtttcgaccgcgccgtcgtgttcgacgacgaagtctggatcctggactac
aagcgcgacctgctcgacagcgagcgcgcggcatatgctgggcagctggcgcgctaccgg
tcggcggcgcgcgccgtctttcccggcaagccgatcaggacggcattgattacagcggac
ggacggttgtgggagctggagtga
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