Noviherbaspirillum sp. UKPF54: FAY22_13000
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Entry
FAY22_13000 CDS
T06116
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
nok
Noviherbaspirillum sp. UKPF54
Pathway
nok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAY22_13000 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nok03019
]
FAY22_13000 (pcnB)
Enzymes [BR:
nok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
FAY22_13000 (pcnB)
Messenger RNA biogenesis [BR:
nok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FAY22_13000 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Gad2
DUF2204
Motif
Other DBs
NCBI-ProteinID:
QDZ28788
LinkDB
All DBs
Position
2817628..2819004
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AA seq
458 aa
AA seq
DB search
MIKKFIRRIFGSSKKTDSRNQPVILGPKEHGINPQLLSPNAVRVTQTLQEAGFKAFVVGG
AVRDLLLGVKPKDFDVATNATPEQVKRLFRRAFIIGRRFQIVHVMFGQELIEVTTFRGAS
SESAPKDEHGRVLRDNTFGEQHEDAERRDFSINAMYYDPASQTVLDYHNGIADIRNKTLR
IIGVPEARFREDPVRLLRVVRFAAKLNFSIDPATRAPIQVMAPLINNVPAARVFDEMLKL
LLSGHALACLHQLRNEGLHHGLLPLLDVVLEQPLGEKFVSLALSGTDDRVKQGKPVSPGF
LFASLLWHQVLEKWNAYKAAGEYPIPALHLAADDVLNAQTEKLALQRKIASDMRDIWAMQ
PRFERRSGKSPYKLLEHVRLRAGYDFLLLRCASGEIDAEVGEWWTAFINGDGAAREELLA
KKIRSEGESHAPKKRRRRSGRSKHKDASTGAPAESSNT
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaaagttcattcgccgtattttcggcagcagcaaaaagacggatagccgcaac
cagcccgtcatcctcgggccaaaggaacacggcatcaacccgcaactgctctcccccaac
gccgtgcgcgtcacgcaaaccctgcaggaagccggcttcaaggcgttcgtcgtcggcggc
gcggtgcgcgatctgctgctcggcgtcaagccgaaggatttcgacgtcgccaccaacgcc
acgccggaacaggtcaagcgcctgttccgccgcgccttcatcatcggccggcgcttccag
atcgtgcacgtgatgttcggccaggagctgatcgaagtcaccaccttccgcggcgcctcg
tcggaaagcgcgcccaaggacgagcacggccgcgtattgcgcgacaataccttcggcgag
cagcatgaagacgcggagcggcgcgacttctccatcaacgcgatgtactacgacccggcc
agccagaccgtgctcgactaccataacggcatcgccgacatccgcaacaagacgctgcgc
atcatcggcgtgccggaagcccggttccgggaagacccggtgcgcctgttgcgcgtggtg
cgctttgccgccaagctgaacttcagcatcgatcccgccacccgcgcaccgatccaggtg
atggcgccgctgatcaacaacgtgccggccgcgcgcgtgttcgacgagatgctgaagctg
ctgctgtccggccatgcgctggcctgcctgcatcagttgcgcaacgagggcctgcatcac
ggcttgctgccgctattggacgtggtgctggagcagccgctaggcgagaaattcgtctcg
ctggcgctgtcaggcaccgacgatcgggtcaagcaaggcaagcccgtatcgccgggcttc
ctgttcgcctcgctgctgtggcatcaggtactggaaaaatggaacgcctacaaggctgcc
ggcgaatacccgatccccgcgctgcacctggcggccgacgacgtgctcaacgcccagacc
gagaagctggcgctgcagcgcaagatcgcgtccgacatgcgcgacatctgggccatgcag
ccgcgcttcgagcggcgctccggcaagtcgccgtacaagctgctggagcacgtgcggctg
cgcgccggctacgacttcctgctgctgcgctgcgcctcgggtgaaatcgacgcggaagtc
ggcgaatggtggaccgccttcatcaatggcgacggcgccgcccgcgaagaactgctggcg
aaaaagatcaggtcggaaggcgaaagccacgcgccgaaaaagcgccgccgccgcagcggg
cgcagcaagcacaaggacgcctccacgggcgccccggccgagagcagcaacacatga
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