Noviherbaspirillum sp. UKPF54: FAY22_13160
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Entry
FAY22_13160 CDS
T06116
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nok
Noviherbaspirillum sp. UKPF54
Pathway
nok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAY22_13160 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nok03019
]
FAY22_13160 (recQ)
03400 DNA repair and recombination proteins [BR:
nok03400
]
FAY22_13160 (recQ)
Enzymes [BR:
nok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FAY22_13160 (recQ)
Messenger RNA biogenesis [BR:
nok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FAY22_13160 (recQ)
DNA repair and recombination proteins [BR:
nok03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FAY22_13160 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QDZ28818
UniProt:
A0A5B8N8F9
LinkDB
All DBs
Position
complement(2848498..2850318)
Genome browser
AA seq
606 aa
AA seq
DB search
MLDQIDSRALDVLQTVFGYPSFRGQQAQIVGQVARGGDALVLMPTGGGKSLCYQIPALLR
DGVGVVVSPLIALMQDQVDALAEVGVRAAFLNSTQTFDEAMRTERKVRNGELDLLYVAPE
RLLTPRCLELLEASKLALFAIDEAHCVSQWGHDFRPEYIKLSVLHERFPNVPRIALTATA
DPQTRAEIAHRLQLDDAMQFVSSFDRPNIRYQIVEKSNGRKQVLDFIKDEHAGEAGIVYC
LSRKKVEETAEFLNAQGVTALPYHAGMDIAKRTANQARFLREDAIVMVATIAFGMGIDKP
DVRFVAHLDLPKSIEGYYQETGRAGRDGAPADAWMAYGLQDVVQQRRMIDESEADENFKR
VQSAKLDAMLGLCETLSCRRVRLLDYFGQQSGPCGNCDTCLNPPVSFDGTVSVQKLLSAI
YRVDQRFGAGHVIDVLRGIDSEKVKQWRHEKLPTFGVGSDVSEAEWRAILRQAIALGLVV
VDHDAYGSLKLTDEARPVLRGERTVQLRQYQKPVKQKRQAAKPKGYVEADLSEQEQVIFD
KLRWWRVETARKHNVPAYVIFHDATMREIAKVKPGSLDALRTVAGVGEKKLETYGEEIVS
LIVELT
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaccagattgacagcagggcgctggacgtactgcaaaccgttttcggatatcca
tcctttcgcggacagcaggcgcagatcgtagggcaggtcgcgcgcggcggcgatgccctg
gtgctgatgccgaccggcggcggcaagtcgctgtgctaccagatccccgccttgctgcgc
gacggcgtgggcgtcgtggtgtcgccgctgatcgcgctgatgcaggaccaggtcgacgct
ctggccgaagtcggcgtgcgtgccgcgttcctcaattccacccagaccttcgacgaagcg
atgcgcaccgaacgcaaggtgcgcaacggcgagctcgacctgctgtacgtcgcgccggag
cgcctgcttacgccgcgctgcctggagctgctggaggcgtcgaaactcgcgctgttcgcg
atcgacgaagcgcattgcgtgtcgcagtgggggcacgacttccggcccgaatacatcaag
ctgtcggtgctgcacgagcgttttccaaacgtgccccgcatcgcgctgacggcgacggcc
gatccgcagacgcgcgccgagatcgcgcaccgcttgcagctcgacgacgcgatgcaattc
gtctcctcgttcgaccggcccaatatccgttaccagatcgtcgaaaagagcaatggccgc
aagcaggtgctcgactttatcaaggacgagcatgccggcgaagcgggcatcgtgtattgc
ctgtcgcgcaagaaggtcgaggaaacggcggaattcctcaacgcccagggcgtgaccgcc
ttgccttaccacgccggcatggacatcgcgaagcgcaccgcgaaccaggcgcgcttcctg
cgcgaagacgccatcgtcatggtggcgaccattgccttcggcatgggcatcgacaagccg
gacgtgcgcttcgtcgcgcatctcgacttacccaagagtatcgagggttattaccaggaa
accggacgtgccggccgcgacggcgcgccggccgacgcctggatggcctacggcttgcaa
gacgtggtgcagcagcgccgcatgatcgatgagtccgaagccgacgaaaacttcaagcgc
gtgcagtccgccaagctcgacgccatgctcggcctgtgcgaaacgctcagctgccgccgc
gtgcgcctgctggattacttcggccagcaatcggggccgtgcggcaattgcgacacctgt
ctcaacccgccggtctccttcgacggcacggtttccgtgcaaaagctgctgtcggcgatt
taccgggtcgaccagcgcttcggtgccggccatgtgatcgacgtgctgcgcgggatcgat
tcggaaaaagtgaagcagtggcggcatgaaaagctgcccacattcggcgtcggcagcgac
gtcagcgaggcggaatggcgcgccatcctgcgccaggcgattgcattgggcctggtcgtg
gtcgatcacgacgcctacggatcgctcaagctgactgacgaagcgcgcccggtgctgcgc
ggggaacgcacggtgcagctgcggcagtatcagaaaccggtgaagcagaagcgccaggcc
gccaagcccaagggctatgtcgaagccgatttgtcggaacaggagcaggttattttcgac
aagctgcgctggtggcgcgtcgaaaccgcgcgcaagcacaacgtgccggcctacgtgatc
ttccatgacgcgacgatgcgcgaaatcgcgaaagtcaagccgggctcgctggacgcgctg
cgcactgtcgctggcgtcggcgagaagaaactcgagacctatggcgaagaaatcgtgtcg
ctgatcgtggaactgacttga
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