Noviherbaspirillum sp. UKPF54: FAY22_13530
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Entry
FAY22_13530 CDS
T06116
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
nok
Noviherbaspirillum sp. UKPF54
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nok03016
]
FAY22_13530
Enzymes [BR:
nok01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FAY22_13530
Transfer RNA biogenesis [BR:
nok03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FAY22_13530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
QDZ28885
UniProt:
A0A5B8N778
LinkDB
All DBs
Position
complement(2940224..2942218)
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AA seq
664 aa
AA seq
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MNLFFEESGDFKAGTVLSQQGEAYQVEMQTGKRTKVKARDVLLQFAAPEPVQLMADAQAI
ADDIDLDFLWEVAGGEEFGFAELGAEYFGHTPRPDEAAGLLLRLHSAPVYFYKKGKGRYK
AAPEASLKAALTGIEKKKQQALIQAQYAEELKSHRLPEAMKPLALQLLFKPDKNSIEYKA
LETASAELQTSPQRLMLAAGGIGSPKELHLAKFLFEHFPKGTGFPSIDLPTVAALPVADV
RAFSIDDVTTTEIDDALSVVHLADGKVRVGIHIAAPALGIKRGDAIDAIARQRLSTVYMP
GDKITMLPDELVDAFTLAEGKTCPAVSLYATLDPADWSVVSTETRAESVPIAANLRHNDL
DELVTEENLAAGAGEYAHKDEIALLWQWAQVLEKARMAKRESFGLKPEQTNRVDFNFYVE
DDVVSILRRKRGAPLDKIVAELMIFANSTWGKLMHDHGVPGIYRSQGGGGGGWAAKMQVR
MVTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILACAEHGVTAPLVAPFKPKDADLFA
IVSAFDAAYSAYADFQSGMERYWCLRWLAQENARQVDAVVLKDEVLRLVDIPLIIRLPGM
PQAARGAHVKLDLIRWDEVDLTIEARLIEMTTGPADIEEASALVAEDEDAASEEEAAAES
VQQQ
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaatctctttttcgaggaatccggcgacttcaaggccggcacggtgttgtcgcaacaa
ggcgaggcgtaccaggtcgaaatgcagaccggcaaacgcaccaaggtcaaggcgcgcgac
gtgctgctgcaattcgccgcaccggagccggtgcagctgatggccgatgcgcaggcgatt
gctgacgacatcgacctggattttttatgggaagtggccggcggagaagagttcggcttc
gccgagctgggcgccgaatatttcggccacactccccggcccgacgaggccgccggattg
ctgttgcgcctgcacagcgcccccgtctatttctacaagaaaggcaagggacgctacaag
gcggcgccggaggcgtcgctgaaagccgccctgaccggcatcgaaaagaaaaagcagcag
gcgctgatccaggcgcaatatgccgaggaactgaagtcgcaccggttgccggaagcgatg
aagccgctggcgttgcagctgctgttcaagcccgacaagaacagcatcgaatacaaggcg
ctggagaccgccagcgccgaactgcagacgtcgccgcagcgcctgatgctggccgcgggc
ggcatcggctcgcccaaggagctgcatctggcgaaattcctgttcgagcattttccgaag
gggaccggctttccatccatcgatcttcccacggtggctgcgctgccggtggccgacgtg
cgcgccttttcgatcgacgatgtgaccacgaccgagatcgacgatgccttgtcggtcgtc
cacctggccgacggcaaggtgcgggtcggcatccacatcgccgccccggcgctcggcatc
aagcgcggcgatgcgatcgacgccattgcgcggcagcgcctgtcgaccgtttatatgccg
ggcgacaaaatcaccatgctgcccgacgaactggtcgacgcgttcacgctggctgaaggc
aagacttgcccggccgtctccttgtacgcgacgctcgacccggccgactggtcggtcgtg
tcgaccgagacccgggcggaatcggtgccgatcgcggccaacctgcggcacaacgacctg
gacgagctggtcaccgaggaaaacctggcggccggcgccggcgagtatgcgcacaaggac
gagatcgccttgctgtggcaatgggcgcaagtgctggaaaaggcacgcatggccaagcgc
gagagtttcggcctgaagccggagcagaccaatcgcgtcgacttcaacttctacgtggaa
gacgacgtcgtttccatcctgcgccgcaagcgcggtgcgccgctggacaagatcgtcgcc
gagctgatgatctttgccaacagcacctggggaaagctcatgcacgaccatggcgtgccc
ggcatttatcgcagccagggcggcggcggtggcggctgggcggcgaagatgcaggtgcgg
atggtgacgcacgcggcgccacaccaggggctgggcgtcgaccagtacgcctggagcacc
tcgccgctgcggcgctacaccgacctggtgaaccagtggcagatcctggcctgcgccgag
catggagtgaccgcgccgctggtggcgccgttcaagcccaaggacgcggacttgttcgcg
atcgtttccgcgttcgacgccgcctattcggcctacgccgacttccagtccggcatggag
cgctactggtgcttgcgctggctggcgcaggaaaatgcgcgccaggtcgatgccgtggtg
ctgaaggatgaagtgctgcgcctggttgacattccgttaatcattcgcttgcccggcatg
ccgcaagccgcgcgcggcgcacacgtcaagctcgatctgatccgctgggacgaagtcgac
ctcacgatcgaggccaggctgatcgaaatgacgacggggccggccgatatcgaggaggca
tcggcgctggtggcggaagatgaagacgccgcaagcgaagaggaagccgccgccgaatcg
gtgcaacagcaataa
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