Noviherbaspirillum sp. UKPF54: FAY22_14890
Help
Entry
FAY22_14890 CDS
T06116
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
nok
Noviherbaspirillum sp. UKPF54
Pathway
nok00300
Lysine biosynthesis
nok00470
D-Amino acid metabolism
nok01100
Metabolic pathways
nok01110
Biosynthesis of secondary metabolites
nok01120
Microbial metabolism in diverse environments
nok01230
Biosynthesis of amino acids
Module
nok_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
FAY22_14890 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
FAY22_14890 (dapF)
Enzymes [BR:
nok01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
FAY22_14890 (dapF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QDZ29130
UniProt:
A0A5B8N6Z7
LinkDB
All DBs
Position
3239900..3240751
Genome browser
AA seq
283 aa
AA seq
DB search
MKLKFTKMHGAGNDFVVIDGINQQIDFTPAQWQQLADRRFGVGADQMLVVEKPQSADVDF
RYRIYNADGGEVEQCGNGSRAFVKFVTDKGLTDKRTIRVETMSGVIEPRLEADGSITVDM
GAPVLEPERVPFNATGLQGRREGDDLLWPLDVNGKTDWFSVVSMGNPHAVQVVDDAQAAA
VELDGPAIEHHLRFPRRVNAGFMQIVDRHSIRLRVFERGAGETLACGTGACAAVVAGIRR
GLLDSPVKVATRGGELSIAWAGPGNSVMLTGPAVSVFEGEIEL
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcaaattcaccaagatgcatggcgccggcaacgacttcgtcgtgatcgacggg
atcaaccagcagatcgacttcacaccggcgcaatggcagcagctggctgaccgccgtttc
ggcgtgggcgccgaccagatgctggtggtcgaaaagccgcaatcagcggacgtcgatttc
cgctaccgcatctacaacgccgacggtggcgaggtcgagcaatgcggcaacggctcgcgc
gcgttcgtcaaattcgtcaccgacaagggcctcaccgacaagcgcacgatcagggtggaa
accatgtcgggcgtaatcgagccgcgactggaagccgacggcagcattacggtggacatg
ggcgcgccggtgctggaaccagagcgcgtaccgttcaacgcgaccggcttgcagggaagg
cgcgaaggcgacgacctgctctggccactcgacgtcaatggcaagactgactggttctcc
gtggtttcgatgggcaatccgcatgccgtgcaggtcgtcgacgatgcgcaggctgccgcc
gtggaattggacggcccggcaatcgagcatcatctgcgcttccccaggcgggtcaacgcc
ggcttcatgcagatcgtcgatcgtcacagcatccggttgagggtattcgagcgcggtgcg
ggcgaaacacttgcctgcggcaccggcgcctgcgctgccgttgtcgccggcatccggcgc
ggcctgctggactcgccagtgaaggtggcaacgcgcggcggagagttgtcgatcgcctgg
gccggcccgggcaattcggtcatgctgacgggtcctgcagtcagcgtattcgaaggcgaa
atagagctgtga
DBGET
integrated database retrieval system