Noviherbaspirillum sp. UKPF54: FAY22_18595
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Entry
FAY22_18595 CDS
T06116
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nok
Noviherbaspirillum sp. UKPF54
Pathway
nok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAY22_18595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nok03019
]
FAY22_18595
Enzymes [BR:
nok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FAY22_18595
Messenger RNA biogenesis [BR:
nok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FAY22_18595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
P-loop_SecA
UvrD-helicase
Gag_p24
Shikimate_DH
HI1480
Motif
Other DBs
NCBI-ProteinID:
QDZ29796
UniProt:
A0A5B8NCQ7
LinkDB
All DBs
Position
complement(4017848..4019188)
Genome browser
AA seq
446 aa
AA seq
DB search
MHFTDLGLCADILRAVAEQGYDKPTPIQAQAIPVVLKGHDLMAAAQTGTGKTAGFTLPVL
QLLGNRAAPARSKPRVLVLTPTRELAAQVEDSVRTYGKYLPLKSAVIFGGVGMAPQTQAL
RSGVDIIVATPGRLLDHVGEGNVDLSGIEIFILDEADRMLDMGFIHDIRRVVARLPKKKQ
TLMFSATFSDEIRALAANYLHNPQQVEVAPRNATADMVAQSVYHVDKGRKRDLLVKLIED
NGWHQVLVFTRTKHGANALAEKLDKAGIRSAAIHGNKSQGARTRALADFKSLKLHVLVAT
DIAARGIDIDLLPHVVNYELPNVPEDYVHRIGRTGRAGSAGQAVSLVCVDEHKLLRDIER
LLKREIEVKAMAGFEVDPRIKAEPIENGRRSQGRRGPAPSAQRQQRPPQQRASQDAKGTK
GATPATKPAGQRRKTERGTGARSRVS
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcatttcaccgatctcggcctatgcgccgacattctgcgcgccgttgccgaacaaggc
tacgacaagcccaccccgatccaggcacaggcgattcccgtcgtgctcaaagggcatgac
ttgatggcggcggcccagaccggcactggcaagaccgccggctttacgctgccggtcctg
caactgctcggcaaccgtgccgccccggcgcgcagcaagccgcgcgttctggtgctgacg
ccgacgcgcgaactggcggcgcaggtcgaagacagcgtgcgcacctacggcaagtacctg
ccgctcaagtccgccgtcatcttcggcggcgtcggcatggcgccgcaaacccaggccttg
cgttccggcgtcgatatcatcgttgccacgccaggccgcctgctcgaccatgtcggcgaa
ggcaacgtcgatctgtcgggcatcgagattttcattctcgacgaggccgaccgcatgctc
gacatgggtttcatccacgatatccgccgcgtcgtcgcccgactgcccaagaaaaagcag
acgctgatgttttccgccacgttttccgacgagatccgcgcactcgcagcgaactacctg
cacaatccgcagcaggtggaagtggcgccgcgcaacgcgacggccgacatggtcgcgcaa
agcgtctatcacgtcgacaagggcaggaagcgcgatctgctggtcaagctcatcgaagac
aacggctggcatcaggtgctggtgtttacccgcaccaagcacggcgccaatgccctggcc
gaaaaactcgacaaggccggcatccgctccgccgcgattcacggcaacaagagccagggc
gcacgcacccgcgcgctcgccgatttcaagagcctgaagctgcatgtgctggtcgcgacc
gatatcgccgcgcgcggcatcgacatcgatttgctgccgcacgtggtcaactacgagttg
ccgaacgtgccggaagattacgtgcaccgcatcggtcgcaccggacgcgccggcagcgcc
ggccaggctgtgtcgctggtgtgcgtcgacgagcacaagctgttgcgcgatatcgagcgc
ctgctcaagcgcgagatcgaggtcaaggccatggccggcttcgaggtcgacccgcgcatc
aaggccgaaccgatcgaaaacggccggcgcagccaagggcggcgcggccctgcgccctct
gcccagcgccagcaacgtccgccgcagcaacgcgcgtcgcaagacgccaagggtaccaag
ggcgccacgccggcgaccaagcccgccggacagcgccgcaagacggaacgcgggaccggc
gcgcgcagccgcgtctcctga
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